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@hubmapconsortium

HuBMAP Consortium

This is the GitHub organization for repos related to the work of the HuBMAP Consortium.

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  1. entity-api entity-api Public

    A set of web service calls to return information about HuBMAP entities

    Python 3 1

  2. gateway gateway Public

    Custom gateway service with auth check for APIs and file assets not hosted with AWS API Gateway

    Python

  3. search-api search-api Public

    HuBMAP search service and associated pieces to create an index

    Python 2 2

  4. portal-ui portal-ui Public

    HuBMAP Data Portal front end

    TypeScript 12 2

  5. ingest-ui ingest-ui Public

    HuBMAP Data Ingest Portal

    JavaScript 4

  6. ingest-pipeline ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    Python 4 5

Repositories

Showing 10 of 177 repositories
  • hra-hubmap-kpmp-integration Public

    [WIP] repo for exploring HRA HuBMAP + KPMP Integration

    hubmapconsortium/hra-hubmap-kpmp-integration’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jan 13, 2025
  • search-api Public

    HuBMAP search service and associated pieces to create an index

    hubmapconsortium/search-api’s past year of commit activity
    Python 2 MIT 2 20 1 Updated Jan 12, 2025
  • entity-api Public

    A set of web service calls to return information about HuBMAP entities

    hubmapconsortium/entity-api’s past year of commit activity
    Python 3 MIT 1 50 2 Updated Jan 10, 2025
  • hra-do-processor Public

    hra-do-processor: HRA Digital Objects Processor

    hubmapconsortium/hra-do-processor’s past year of commit activity
    JavaScript 2 MIT 0 9 0 Updated Jan 10, 2025
  • visium-pipeline Public
    hubmapconsortium/visium-pipeline’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Jan 10, 2025
  • dataset-metadata-spreadsheet Public

    This repository stores all the next-generation dataset metadata specification produced by the Data Coordination Working Group (DCWG). Every distinct folder corresponds to a particular assay or tissue sample used to produce the dataset.

    hubmapconsortium/dataset-metadata-spreadsheet’s past year of commit activity
    1 MIT 0 2 0 Updated Jan 10, 2025
  • portal-ui Public

    HuBMAP Data Portal front end

    hubmapconsortium/portal-ui’s past year of commit activity
    TypeScript 12 MIT 2 200 30 Updated Jan 10, 2025
  • hra-kg Public

    HRA-KG: Human Reference Atlas Knowledge Graph

    hubmapconsortium/hra-kg’s past year of commit activity
    Mermaid 2 MIT 1 4 0 Updated Jan 10, 2025
  • hra-ui Public

    HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)

    hubmapconsortium/hra-ui’s past year of commit activity
    TypeScript 4 MIT 2 82 1 Updated Jan 10, 2025
  • sc-atac-seq-pipeline Public

    ATAC-seq pipelines for HuBMAP

    hubmapconsortium/sc-atac-seq-pipeline’s past year of commit activity
    Python 2 MIT 4 11 3 Updated Jan 10, 2025
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