Move workflow #2
Workflow file for this run
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| # ----------------------------------------------------------------------------- | ||
| # - invoked on push, pull_request, manual trigger, or schedule | ||
| # - test under at least 3 versions of python | ||
| # ----------------------------------------------------------------------------- | ||
| name: build_utils | ||
| on: | ||
| workflow_call: | ||
| inputs: | ||
| dependencies: | ||
| description: "String of comma-separated dependencies to check for upstream branches" | ||
| required: true | ||
| type: string | ||
| skip_mypy: | ||
| description: "Boolean to determine if mypy should be run" | ||
| required: false | ||
| default: true | ||
| type: boolean | ||
| install_type: | ||
| description: "String of install type. Typically dev or test" | ||
| required: false | ||
| default: "dev" | ||
| type: string | ||
| jobs: | ||
| build_template: | ||
| runs-on: ubuntu-latest | ||
| defaults: | ||
| run: | ||
| shell: bash -le {0} | ||
| install dependencies: | ||
| uses: ihmeuw/vivarium_build_utils/.github/workflows/install.yml@albrja/mic-5469/modularize-workflows | ||
| with: | ||
| dependencies: ${{ inputs.dependencies }} | ||
| install_type: ${{ inputs.install_type }} | ||
| steps: | ||
| # - uses: actions/checkout@v3 | ||
| # with: | ||
| # fetch-depth: 0 | ||
| # - name: Set up Python ${{ matrix.python-version }} | ||
| # uses: actions/setup-python@v4 | ||
| # with: | ||
| # python-version: ${{ matrix.python-version }} | ||
| # - name: get upstream branch name | ||
| # run: | | ||
| # if "${{ github.event_name == 'pull_request' }}" ; then | ||
| # echo "branch_name=${GITHUB_HEAD_REF}" >> $GITHUB_ENV | ||
| # else | ||
| # echo "branch_name=${GITHUB_REF_NAME}" >> $GITHUB_ENV | ||
| # fi | ||
| # - name: Update pip | ||
| # run: | | ||
| # python -m pip install --upgrade pip | ||
| # - name: Install dependencies | ||
| # run: | | ||
| # echo "Install requirement is ${{ inputs.install_type }}" | ||
| # pip install .[${{ inputs.install_type }}] | ||
| # git checkout ${branch_name} | ||
| # - name: Check for dependency branches and install if needed | ||
| # run: | | ||
| # git clone https://github.com/ihmeuw/vivarium_build_utils.git ../vivarium_build_utils | ||
| # echo "----------------------------------------" | ||
| # echo "Contents of install_dependency_branch.sh" | ||
| # echo "----------------------------------------" | ||
| # cat ../vivarium_build_utils/install_dependency_branch.sh | ||
| # echo "" | ||
| # echo "----------------------------------------" | ||
| # for package in $(echo ${{ inputs.dependencies }} | sed "s/,/ /g"); do | ||
| # sh ../vivarium_build_utils/install_dependency_branch.sh ${package} ${branch_name} github | ||
| # done | ||
| # - name: print environment values | ||
| # run: | | ||
| # cat $GITHUB_ENV | ||
| - name: Lint | ||
| run: | | ||
| pip install black==22.3.0 isort | ||
| isort . --check --verbose --only-modified --diff | ||
| echo "----------------------------------------" | ||
| black . --check --diff | ||
| echo "----------------------------------------" | ||
| if "${{ inputs.skip_mypy }}" == "false"; then | ||
| mypy . | ||
| fi | ||
| - name: Test | ||
| run: | | ||
| if "${{ github.event_name == 'schedule' }}"; then | ||
| pytest --runslow ./tests | ||
| else | ||
| pytest ./tests | ||
| fi | ||
| - name: Doc build | ||
| run: | | ||
| make html -C docs/ SPHINXOPTS="-W --keep-going -n" | ||
| - name: Doctest | ||
| run: | | ||
| make doctest -C docs/ | ||
| - name: Send mail | ||
| # Notify when cron job fails | ||
| if: (github.event_name == 'schedule' && failure()) | ||
| uses: dawidd6/action-send-mail@v2 | ||
| with: | ||
| # mail server settings | ||
| server_address: smtp.gmail.com | ||
| server_port: 465 | ||
| # user credentials | ||
| username: ${{ secrets.NOTIFY_EMAIL }} | ||
| password: ${{ secrets.NOTIFY_PASSWORD }} | ||
| # email subject | ||
| subject: ${{ github.job }} job of ${{ github.repository }} has ${{ job.status }} | ||
| # email body as text | ||
| body: ${{ github.job }} job in worflow ${{ github.workflow }} of ${{ github.repository }} has ${{ job.status }} | ||
| # comma-separated string, send email to | ||
| to: [email protected] | ||
| # from email name | ||
| from: Vivarium Notifications | ||
