init repo

.github/workflows/CI.yml

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+# https://github.com/Alexander-Barth/NCDatasets.jl/blob/master/.github/workflows/ci.yml
+name: CI
+on:
+  - push
+  - pull_request
+jobs:
+  test:
+    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+          # - '1.3'
+          - '1'
+          # - 'nightly'
+        os:
+          - ubuntu-latest
+          - macOS-latest
+          # - windows-latest
+        arch:
+          - x64
+    steps:
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
+        with:
+          version: ${{ matrix.version }}
+          arch: ${{ matrix.arch }}
+      - uses: julia-actions/cache@v1
+      - uses: julia-actions/julia-buildpkg@latest
+      - run: |
+          git config --global user.name Tester
+          git config --global user.email [email protected]
+      - uses: julia-actions/julia-runtest@latest
+        continue-on-error: ${{ matrix.version == 'nightly' }}
+
+      - uses: julia-actions/julia-processcoverage@v1
+      - uses: codecov/codecov-action@v4
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          file: lcov.info

.github/workflows/CompatHelper.yml

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+name: CompatHelper
+
+on:
+  schedule:
+    - cron: '15 23 */4 * *'
+
+jobs:
+  CompatHelper:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        julia-version: [1.2.0]
+        julia-arch: [x86]
+        os: [ubuntu-latest]
+    steps:
+      - uses: julia-actions/setup-julia@latest
+        with:
+          version: ${{ matrix.julia-version }}
+      - name: Pkg.add("CompatHelper")
+        run: julia -e 'using Pkg; Pkg.add("CompatHelper")'
+      - name: CompatHelper.main()
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run: julia -e 'using CompatHelper; CompatHelper.main()'

.github/workflows/Documenter.yml

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+name: Documenter
+on:
+  push:
+    branches: [master, main]
+    tags: [v*]
+  pull_request:
+    branches: [master, main]
+jobs:
+  Documenter:
+    name: Documentation
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - uses: julia-actions/julia-buildpkg@latest
+      - uses: julia-actions/julia-docdeploy@latest
+        env:
+          RASTERDATASOURCES_PATH: ".."
+          GKSwstype: "100"
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}

.github/workflows/TagBot.yml

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+# https://github.com/JuliaRegistries/TagBot
+name: TagBot
+on:
+  issue_comment:
+    types:
+      - created
+  workflow_dispatch:
+jobs:
+  TagBot:
+    if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot'
+    runs-on: ubuntu-latest
+    steps:
+      - uses: JuliaRegistries/TagBot@v1
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          # Edit the following line to reflect the actual name of the GitHub Secret containing your private key
+          ssh: ${{ secrets.DOCUMENTER_KEY }}
+          # ssh: ${{ secrets.NAME_OF_MY_SSH_PRIVATE_KEY_SECRET }}

.gitignore

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+Manifest.toml
+*debug*
+.vscode
+docs/build

Project.toml

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+name = "ClimateStats"
+uuid = "f2027f19-6765-4257-993d-235c5fe36d77"
+authors = ["Dongdong Kong <[email protected]>"]
+version = "0.1.0"
+
+[deps]
+Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"
+DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
+Ipaper = "e58298cb-69f7-4186-aecd-5834b6793426"
+NaNStatistics = "b946abbf-3ea7-4610-9019-9858bfdeaf2d"
+Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7"
+Reexport = "189a3867-3050-52da-a836-e630ba90ab69"
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"

docs/Project.toml

@@ -0,0 +1,6 @@
+[deps]
+DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
+Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
+Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
+Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
+StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"

docs/make.jl

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+using Documenter, ClimateStats
+CI = get(ENV, "CI", nothing) == "true"
+
+# Logging.disable_logging(Logging.Warn)
+
+# Make the docs, without running the tests again
+# We need to explicitly add all the extensions here
+makedocs(
+  modules=[
+    ClimateStats
+    # Base.get_extension(Ipaper, :IpaperSlopeExt)
+  ],
+  format=Documenter.HTML(
+    prettyurls=CI,
+  ),
+  pages=[
+    "Introduction" => "index.md"
+    "R Base"       => "RBase.md"
+    "Statistics"   => "Statistics.md"
+    "Slope"        => "Slope.md"
+    "Climate"      => "Climate.md"
+    "Parallel"     => "Parallel.md"
+  ],
+  sitename="ClimateStats.jl",
+  warnonly=true,
+  clean=false,
+)
+
+# Enable logging to console again
+# Logging.disable_logging(Logging.BelowMinLevel)
+
+deploydocs(
+  repo="github.com/jl-pkgs/ClimateStats.jl.git",
+)

docs/src/Climate.md

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+```@contents
+Pages = ["index.md"]
+Depth = 3
+```
+
+## Thresholds
+
+```@docs
+cal_anomaly_quantile
+cal_anomaly_clim
+cal_threshold
+```
+
+```@docs
+_cal_anomaly_3d
+```
+
+```@docs
+cal_mTRS_base
+cal_mTRS_full
+
+cal_climatology_base
+cal_climatology_full
+```
+
+
+```@docs
+Ipaper.cal_mTRS_base!
+Ipaper.cal_mTRS_base3!
+```
+
+
+```@docs
+cal_yearly_Tair
+cal_warming_level
+```

docs/src/index.md

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+# ClimateStats in Julia (R base for Julia)
+
+[![Stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://jl-pkgs.github.io/ClimateStats.jl/stable)
+[![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://jl-pkgs.github.io/ClimateStats.jl/dev)
+[![CI](https://github.com/jl-pkgs/ClimateStats.jl/actions/workflows/CI.yml/badge.svg)](https://github.com/jl-pkgs/ClimateStats.jl/actions/workflows/CI.yml)
+[![Codecov](https://codecov.io/gh/jl-pkgs/ClimateStats.jl/branch/master/graph/badge.svg)](https://codecov.io/gh/jl-pkgs/ClimateStats.jl)
+
+> Dongdong Kong
+
+## Installation
+
+```
+using Pkg
+Pkg.add(url="https://github.com/jl-pkgs/ClimateStats.jl")
+```

src/ClimateStats.jl

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+module ClimateStats
+
+using Ipaper
+using Printf
+using Dates
+using NaNStatistics
+
+using Reexport
+@reexport using DocStringExtensions: TYPEDSIGNATURES, METHODLIST
+
+include("base.jl")
+include("threshold.jl")
+include("climatology.jl")
+include("anomaly.jl")
+include("warming_level.jl")
+
+# export cal_mTRS_base, cal_mTRS_season, cal_mTRS_full
+export format_md
+export cal_climatology_base, cal_climatology_full, cal_climatology_full, 
+  _cal_anomaly, 
+  cal_anomaly_quantile, cal_anomaly_clim, cal_threshold,
+  cal_warming_level, cal_yearly_Tair
+
+
+export filter_mds
+
+end # module ClimateStats