Skip to content

3.3.1
Compare
Choose a tag to compare
@markmikkelsen markmikkelsen released this 14 Mar 19:05
· 94 commits to main since this release
v3.3.1
d78ae2b
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

New features

  • Compressed NIfTI files (*.nii.gz) are now fully supported
  • Gannet now fully quantifies metabolite levels for Cr, Cho, and NAA (estimated from the OFF
    spectrum)

Major changes

  • Moved local signal model functions out of GannetFit.m and into their own files:
    • BaselineModel.m
    • CalcIU.m
    • DoubleGaussModel.m
    • EtOHModel.m
    • GABAGlxModel.m
    • GaussModel.m
    • LorentzGaussModel.m
    • LorentzGaussModelP.m
  • Added GetFullPath.m; Gannet now will find the full path of input files by default
  • Renamed some of the data-loading functions

Minor changes

  • Added a check in GannetQuantify.m for datasets without water references; GannetQuantify.m will
    not run if no water references are present
  • Added a check in GannetCoRegister.m to ensure all structural image files can be found
  • Updated export_fig to v3.33
  • Updated dicm2nii to version 2023.03.08
  • Updated LICENSE and README.md
  • Updated ExportToCSV.m
  • Updated CoRegStandAlone functions
  • Replaced use of 1i with complex()
  • Removed unused variable T1max
  • Removed unnecessary ones() parameter in LorentzModel.m and TwoLorentzModel.m
  • Philips *.spar file extension is no longer saved in the output structure
  • Removed calculation of df in GannetLoad.m; added dt in its place
  • Exported CSV files will no longer be overwritten if a CSV file of the same name already exists in
    the output directory; instead, a new file is created and appended with an integer
  • Added new output structure attribute nrows_water
  • Reordered structure subfields for metabolites in GannetFit.m and ExportToCSV.m
  • Shifted Gannet logo and version number in PDF outputs slightly to the right
  • Alpha values are now included in exported CSV files
  • Replaced the Gannet logo with a PNG version
  • MANY COSMETIC CHANGES

Bug fixes

  • Added a check for letter case of *.dcm and *.ima files in DICOMRead.m and SiemensDICOMRead.m
    (dir() is case-sensitive in Linux)
  • Added a fix to avoid an error where MATLAB tried to close figures following an unrelated internal
    error, but no figures were created
  • Fixed a bug in NIfTIMRSRead.m that led to an error if the Manufacturer field is not found in
    the data file header
  • If export_fig.m cannot be found on the search path and append has been flagged in
    GannetPreInitialise.m, it is made clear to the user that PDFs will be saved separately
  • Fixed bugs in AlignUsingH2O.m
  • Fixed a bug in SiemensDICOMRead.m where an error occurred if centerFreq is not found in the
    data file header
Assets 2
Loading