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Update README.md
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dtaylo95 authored Oct 21, 2021
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# Find closest GWAS Catalog and ClinVar variants to T2T-CHM13 Novel and Non-syntenic Regions
# Find closest GWAS Catalog and ClinVar variants to T2T-CHM13 Previously Unresolved and Non-syntenic Regions

**NOTE**: Any references to "novel" regions in this README file and any scripts are referring to regions that were previously unresolved in the GRCh38 assembly.

1. Generate non-overlapping regions from novel regions and non-syntenic regions in the T2T-CHM13 assembly
- `intersect_novel_and_nonsyntenic.sh`
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2. Plot lengths of non-overlapping novel and non-syntenic regions
- `python generate_no_overlap_length_histogram.py`
- Plots the lengths of the non-overlapping novel and non-sytenic regions that were used as an input to step 3 in the previous section

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