migrate to uv and pyproject.toml

.github/workflows/python_tests.yml

@@ -15,15 +15,14 @@ jobs:
     runs-on: ${{ matrix.platform }}
 
     steps:
-      - uses: actions/checkout@v4
-      - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v5
-        with:
-          python-version: ${{ matrix.python-version }}
-      - name: Install dependencies
-        run: |
-          python -m pip install --upgrade pip setuptools wheel
-          pip install -e .[test]
-      - name: Test with pytest
-        run: |
-          pytest -v
+    - uses: actions/checkout@v4
+    - name: Install uv
+      uses: astral-sh/setup-uv@v4
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v5
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: uv sync --all-extras --dev
+    - name: Run tests
+      run: uv run pytest

pyproject.toml

@@ -1,22 +1,95 @@
-[tool.pyright]
-include = ["nbank"]
-
 [build-system]
-requires = ["setuptools", "wheel"]
-build-backend = "setuptools.build_meta"
+requires = ["hatchling"]
+build-backend = "hatchling.build"
+
+[project]
+name = "neurobank"
+dynamic = ["version"]
+description = "Simple data management system for neuroscience"
+readme = "README.rst"
+license = {text = "BSD 3-Clause License"}
+authors = [
+    {name = "Dan Meliza", email = "[email protected]"},
+]
+maintainers = [
+    {name = "Dan Meliza", email = "[email protected]"},
+]
+classifiers = [
+    "Development Status :: 4 - Beta",
+    "Intended Audience :: Science/Research",
+    "License :: OSI Approved :: BSD License",
+    "Programming Language :: Python",
+    "Programming Language :: Python :: 3.7",
+    "Programming Language :: Python :: 3.8",
+    "Programming Language :: Python :: 3.9",
+    "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
+    "Topic :: Scientific/Engineering",
+    "Operating System :: Unix",
+    "Operating System :: POSIX :: Linux",
+    "Operating System :: MacOS :: MacOS X",
+    "Natural Language :: English",
+]
+requires-python = ">=3.7"
+dependencies = [
+    "httpx>=0.24",
+]
+
+[dependency-groups]
+dev = [
+    "pytest>=7.0",
+    "respx>=0.20",
+    "ruff>=0.7.0"
+]
+
+[project.urls]
+Homepage = "https://github.com/melizalab/neurobank"
+
+[project.scripts]
+nbank = "nbank.script:main"
+
+[tool.hatch.version]
+path = "nbank/__init__.py"
+
+[tool.black]
+line-length = 88
+target-version = ["py310"]
+include = '\.pyi?$'
+
+[tool.pytest.ini_options]
+python_files = ["test_*.py", "*_test.py"]
+addopts = "-v"
+testpaths = ["test"]
 
 [tool.ruff]
-target-version = "py37"
-extend-exclude = ["attic"]
+line-length = 88
+target-version = "py310"
 
 [tool.ruff.lint]
 extend-select = [
+  "E",  # pycodestyle errors
+  "W",  # pycodestyle warnings
+  "F",  # pyflakes
   "B",   # flake8-bugbear
   "I",   # isort
   "PGH", # pygrep-hooks
   "RUF", # Ruff-specific
   "UP",  # pyupgrade
 ]
+ignore = ["E221", "E501", "E701"]
+
+[tool.ruff.lint.per-file-ignores]
+"__init__.py" = ["F401"]
 
 [tool.mypy]
-ignore_missing_imports = true
+python_version = "3.8"
+ignore_missing_imports = true
+strict_optional = true
+check_untyped_defs = true
+
+[tool.hatch.build]
+include = ["nbank/**"]
+exclude = ["*test*"]
+artifacts = ["README.rst"]
+