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MiXCR v1.4
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@dbolotin dbolotin released this 21 Aug 16:53
· 3969 commits to develop since this release
v1.4
a3db51e
  • migration to MiLib 1.1
  • new parameter: vjAlignmentOrder (possible values VThenJ and JThenV). Usage mixcr align -OvjAlignmentOrder=JThenV ... . Previous behaviour of MiXCR was equivalent to JThenV, while now default value for the parameter is VThenJ. Parameter affects only Single-Read alignments and alignment of overlapped paired-end reads. Non-overlaping paired-end reads are always porcessed in VThenJ mode. JThenV can be used for short reads (~100bp) with full (or nearly full) J gene coverage.
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