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MiXCR v3.0.8
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@dbolotin dbolotin released this 22 Jul 18:38
· 3019 commits to develop since this release
v3.0.8
98f1240
Major changes
  • Alignments are forced to the corresponding edge if the same V/J gene is detected in the opposite PE read mate
  • Average quality threshold (-OaverageQualityThreshold=...) in assembleContigs increased to 20
  • Added exportAlignmentsForClones action
  • All indels in homopolimeric stretches are now shifted left in all alignment algorihtms
  • Smarter base V/J/C hit selection in assembleContigs
  • Read quality trimming (see help for --trimming-window-size and --trimming-quality-threshold options in align) (disabled by default until 3.1)
  • Fix exception in -mutationsDetailed and similar export options
  • Fixes in step skipping logic in analyze (additional automatic parameter adjustment for VDJC libraries covering only VRegion)
  • Several more fixes for assembleContigs
Minor changes
  • Fixes incorrect numbers in assemble report
  • Fix for filterAlignmentsAction

MiXCR is free for non-profit use only (see LICENSE for details)!
For commercial use please contact [email protected].

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