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Fix samtools ruls conda setup #98

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Fix samtools ruls conda setup

Fix samtools ruls conda setup #98

Triggered via push December 3, 2024 11:49
@lczechlczech
pushed 727194e
master
Status Success
Total duration 1h 1m 2s
Artifacts 53

ci.yaml

on: push
Matrix: envs
Matrix: example
Matrix: test
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47 warnings
test (ubuntu-latest, hafpipe-2, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, hafpipe-1, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, hafpipe-4, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, hafpipe-3, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, pileup-1, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, calling-bcftools-4, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, calling-bcftools-2, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, calling-bcftools-1, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, calling-bcftools-3, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, calling-freebayes-2, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, mappings-table, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, calling-freebayes-3, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, calling-freebayes-1, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, trimming-adapterremoval-1, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, duplicates-dedup-2, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, trimming-none, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, calling-haplotypecaller-2, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, calling-haplotypecaller-3, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, calling-haplotypecaller-4, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, duplicates-dedup-1, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, trimming-seqprep-2, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, calling-haplotypecaller-1, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, trimming-seqprep-1, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
envs (macos-12, micromamba)
The macOS-12 environment is deprecated, consider switching to macOS-13, macOS-14 (macos-latest) or macOS-15. For more details, see https://github.com/actions/runner-images/issues/10721
test (ubuntu-latest, trimming-fastp-2, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, trimming-fastp-3, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, mapping-bwa-aln-2, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, download, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, mapping-bwa-aln-4, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, trimming-adapterremoval-3, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, trimming-adapterremoval-2, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, trimming-cutadapt-1, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
envs (macos-12, mamba)
The macOS-12 environment is deprecated, consider switching to macOS-13, macOS-14 (macos-latest) or macOS-15. For more details, see https://github.com/actions/runner-images/issues/10721
test (ubuntu-latest, trimming-skewer-1, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, mapping-bwa-aln-3, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, mapping-bwa-aln-1, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, trimming-fastp-1, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, trimming-skewer-2, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, mapping-bwa-mem2-1, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, mapping-bwa-mem-1, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, trimming-cutadapt-2, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, base, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, mapping-bowtie2-1, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, mapping-bwa-mem2-2, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
test (ubuntu-latest, mapping-bowtie2-2, mamba)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
example (macos-12)
The macOS-12 environment is deprecated, consider switching to macOS-13, macOS-14 (macos-latest) or macOS-15. For more details, see https://github.com/actions/runner-images/issues/10721
test (macos-12, base)
The macOS-12 environment is deprecated, consider switching to macOS-13, macOS-14 (macos-latest) or macOS-15. For more details, see https://github.com/actions/runner-images/issues/10721

Artifacts

Produced during runtime
Name Size
logs-example-macos-12
131 KB
logs-example-macos-13
132 KB
logs-example-ubuntu-20.04
132 KB
logs-example-ubuntu-22.04
132 KB
logs-example-ubuntu-24.04
133 KB
logs-test-macos-12-base
175 KB
logs-test-macos-13-base
178 KB
logs-test-ubuntu-20.04-base
175 KB
logs-test-ubuntu-22.04-base
174 KB
logs-test-ubuntu-24.04-base
175 KB
logs-test-ubuntu-latest-base
175 KB
logs-test-ubuntu-latest-calling-bcftools-1
91.2 KB
logs-test-ubuntu-latest-calling-bcftools-2
92.8 KB
logs-test-ubuntu-latest-calling-bcftools-3
104 KB
logs-test-ubuntu-latest-calling-bcftools-4
101 KB
logs-test-ubuntu-latest-calling-freebayes-1
96.7 KB
logs-test-ubuntu-latest-calling-freebayes-2
94.2 KB
logs-test-ubuntu-latest-calling-freebayes-3
95.9 KB
logs-test-ubuntu-latest-calling-haplotypecaller-1
174 KB
logs-test-ubuntu-latest-calling-haplotypecaller-2
144 KB
logs-test-ubuntu-latest-calling-haplotypecaller-3
173 KB
logs-test-ubuntu-latest-calling-haplotypecaller-4
164 KB
logs-test-ubuntu-latest-download
99.2 KB
logs-test-ubuntu-latest-duplicates-dedup-1
161 KB
logs-test-ubuntu-latest-duplicates-dedup-2
161 KB
logs-test-ubuntu-latest-hafpipe-1
77.3 KB
logs-test-ubuntu-latest-hafpipe-2
84.8 KB
logs-test-ubuntu-latest-hafpipe-3
85.4 KB
logs-test-ubuntu-latest-hafpipe-4
82.7 KB
logs-test-ubuntu-latest-mapping-bowtie2-1
167 KB
logs-test-ubuntu-latest-mapping-bowtie2-2
176 KB
logs-test-ubuntu-latest-mapping-bwa-aln-1
178 KB
logs-test-ubuntu-latest-mapping-bwa-aln-2
167 KB
logs-test-ubuntu-latest-mapping-bwa-aln-3
185 KB
logs-test-ubuntu-latest-mapping-bwa-aln-4
175 KB
logs-test-ubuntu-latest-mapping-bwa-mem-1
167 KB
logs-test-ubuntu-latest-mapping-bwa-mem2-1
164 KB
logs-test-ubuntu-latest-mapping-bwa-mem2-2
187 KB
logs-test-ubuntu-latest-mappings-table
141 KB
logs-test-ubuntu-latest-pileup-1
64.2 KB
logs-test-ubuntu-latest-trimming-adapterremoval-1
154 KB
logs-test-ubuntu-latest-trimming-adapterremoval-2
171 KB
logs-test-ubuntu-latest-trimming-adapterremoval-3
166 KB
logs-test-ubuntu-latest-trimming-cutadapt-1
171 KB
logs-test-ubuntu-latest-trimming-cutadapt-2
268 KB
logs-test-ubuntu-latest-trimming-fastp-1
224 KB
logs-test-ubuntu-latest-trimming-fastp-2
161 KB
logs-test-ubuntu-latest-trimming-fastp-3
164 KB
logs-test-ubuntu-latest-trimming-none
159 KB
logs-test-ubuntu-latest-trimming-seqprep-1
136 KB
logs-test-ubuntu-latest-trimming-seqprep-2
132 KB
logs-test-ubuntu-latest-trimming-skewer-1
190 KB
logs-test-ubuntu-latest-trimming-skewer-2
190 KB