grenepipe v0.8.0

lczech released this 13 Jun 22:57

· 247 commits to master since this release

6821d1d

Notable Changes

Change main grenepipe environment to Snakemake 6.0.5 (for now)
Add platform info to bam read group tags #20
Add support for local snpEff database #13
Remove shadow rules, as they create too many intermediate files

Bug Fixes

Fix snpEff download directory to work without trailing slash #12
Fix R1 matching in generate table script
Switch from pandas append to concat to avoid deprecation

Assets 2