Skip to content

Commit

Permalink
Merge branch 'jdaw/release-v0.7.1' into 'release-v0.7'
Browse files Browse the repository at this point in the history
updates for release v0.7.1

See merge request machine-learning/dorado!1041
  • Loading branch information
tijyojwad committed Jun 3, 2024
2 parents a9c6f59 + 8c51071 commit 80da5f5
Show file tree
Hide file tree
Showing 3 changed files with 16 additions and 5 deletions.
11 changes: 11 additions & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,17 @@

All notable changes to Dorado will be documented in this file.

# [0.7.1] (3 June 2024)

This release of Dorado fixes out of memory errors when using the v5 SUP model with methylation calling, resolves several bugs in `dorado correct` and adds correct handling of the `BC:Z` tag when running `demux` multiple times.

* a9c6f59bff450d2a822ca5b64b18162bfd9b9a09 - Fetch available memory correctly for autobatch calculation with modbase models
* eb24124ba8f1a72c6730c1ce4b178f020c9d3565 - Move developer quickstart and extend installation instructions
* 45b8acc730ddbe6b438cf17153a64c084d1af2fb - Package missing CUDA Toolkit dependencies with `dorado`
* 33578e7c6d3af063389411ae6d7436ed6d0f94a1 - Update BC tag instead of adding a new one
* 580ad61ccd0f193c88202c852cbea38790c50700 - Prevent creation of CUDA stream when device is CPU
* 82078c5e0bc9545010f2405e92f93d8cff0c35db - Fix segfault with htslib pointer freeing in Windows

# [0.7.0] (21 May 2024)

This release of Dorado introduces new and more accurate v5 models for improved basecalling. It also adds a new subcommand, `dorado correct`, for single-read error correction to help Nanopore based *de novo* assemblies of haploid or diploid genomes. In addition, this release contains a slew of bug fixes, stability enhancements and updates to barcode classification.
Expand Down
8 changes: 4 additions & 4 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -22,10 +22,10 @@ If you encounter any problems building or running Dorado, please [report an issu

First, download the relevant installer for your platform:

- [dorado-0.7.0-linux-x64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.0-linux-x64.tar.gz)
- [dorado-0.7.0-linux-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.0-linux-arm64.tar.gz)
- [dorado-0.7.0-osx-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.0-osx-arm64.zip)
- [dorado-0.7.0-win64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.0-win64.zip)
- [dorado-0.7.1-linux-x64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.1-linux-x64.tar.gz)
- [dorado-0.7.1-linux-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.1-linux-arm64.tar.gz)
- [dorado-0.7.1-osx-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.1-osx-arm64.zip)
- [dorado-0.7.1-win64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.1-win64.zip)

Once the relevant `.tar.gz` or `.zip` archive is downloaded, extract the archive to your desired location.

Expand Down
2 changes: 1 addition & 1 deletion cmake/DoradoVersion.cmake
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
set(DORADO_VERSION_MAJOR 0)
set(DORADO_VERSION_MINOR 7)
set(DORADO_VERSION_REV 0)
set(DORADO_VERSION_REV 1)

find_package(Git QUIET)
if(GIT_FOUND AND EXISTS "${PROJECT_SOURCE_DIR}/.git")
Expand Down

0 comments on commit 80da5f5

Please sign in to comment.