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Merge to main for version 2.0.0 #799

Merged
merged 51 commits into from
Dec 7, 2024
Merged

Merge to main for version 2.0.0 #799

merged 51 commits into from
Dec 7, 2024

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tennlee
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@tennlee tennlee commented Dec 7, 2024

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tennlee and others added 30 commits November 15, 2024 11:31
Update develop to incorporate the changes to main from release 1.3.0. A subsequent change will update the tracking for develop.
Update to tutorial for Brier Score using DOI
* feat: Add Positive Predictive Value function and update alias docstrings

Signed-off-by: arshia <[email protected]>
Co-authored-by: Arshia Sharma <[email protected]>
Co-authored-by: Stephanie Chong <[email protected]>
* Update to black version. No files needed changing.
* Update files for compatibility with latest version of black
* Update pre-commit with the update to the black version
* Add Jetbrains IDE files to .gitignore
* Pin dependencies during hatch builds
* Add zenodo entry
* Update mypy version
* Update pylint version
* Bring files up to compliance
Signed-off-by: Stephanie Chong <[email protected]>
* all of the 'chainging_func_kwargs' are changed to 'chaining_func_kwargs'
Jupyter notebook rerun everything to reflect the changes on method name

* This file change was inadvertently included from another feature branch

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Co-authored-by: jifu2274 <[email protected]>
…change (#781)

A spelling correction has been made to an argument name, which is technically a breaking change, which necessitates a major version update.
* Add PyCon AU video to readme

Signed-off-by: Stephanie Chong <[email protected]>

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Signed-off-by: Stephanie Chong <[email protected]>
* Add information about Zenodo archive to README

---------

Signed-off-by: Stephanie Chong <[email protected]>
* feat: add ppv function and update alias docstrings
* update included.md


Co-authored-by: Stephanie Chong <[email protected]>
Signed-off-by: arshia <[email protected]>

* Update docs/included.md

Co-authored-by: Stephanie Chong <[email protected]>
Signed-off-by: arshia <[email protected]>

---------

Signed-off-by: arshia <[email protected]>
Co-authored-by: Arshia Sharma <[email protected]>
Co-authored-by: Stephanie Chong <[email protected]>
* Refactored isotonic regression function from scikit-learn to scipy

Please note, this was manually speed tested, and proved to be faster according to that test regime. So this PR reduces complexity and may speed things up at the same time.

---------

Signed-off-by: Tennessee Leeuwenburg <[email protected]>
Co-authored-by: AJ Fisher <[email protected]>
Co-authored-by: Tennessee Leeuwenburg <[email protected]>
Co-authored-by: Stephanie Chong <[email protected]>
tennlee and others added 21 commits December 1, 2024 15:57
* Update contributor guide to include more information on forking and branch management
Add a new emerging score - Risk Matrix
Co-authored-by: Stephanie Chong <[email protected]>
Co-authored-by: Nicholas Loveday <[email protected]>
Signed-off-by: Tennessee Leeuwenburg <[email protected]>
Modify column and row labels for HTML rendered contingency table
Update contigency table tutorial to match.
* Update admonitions for emerging metrics in API, tutorial and README, plus add an admonition to included page in docs
* Add the new score "brier_score_for_ensemble" with the fair brier correction

Co-authored-by: Stephanie Chong <[email protected]>
Signed-off-by: Tennessee Leeuwenburg <[email protected]>
Co-authored-by: Tennessee Leeuwenburg <[email protected]>
Signed-off-by: Nicholas Loveday <[email protected]>
@tennlee tennlee merged commit 43a5a89 into main Dec 7, 2024
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@Steph-Chong
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@arshiaar, @lbluett, @JinghanFu, @techdragon, @AJTheDataGuy - thanks again for your very helpful contributions to scores.

Just a note to say that version 2.0.0 of scores has just been released. The release notes can be found here and the Zenodo record can be found here. If there are any errors in the release notes or the Zenodo record, do let us know so that we can update them.

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9 participants