Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Use gtdb r220 in full test #743

Open
wants to merge 1 commit into
base: dev
Choose a base branch
from
Open

Use gtdb r220 in full test #743

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
3 changes: 1 addition & 2 deletions conf/test_full.config
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -22,8 +22,7 @@ params {
//centrifuge_db = "s3://ngi-igenomes/test-data/mag/p_compressed+h+v.tar.gz"
kraken2_db = "s3://ngi-igenomes/test-data/mag/minikraken_8GB_202003.tgz"
cat_db = "s3://ngi-igenomes/test-data/mag/CAT_prepare_20210107.tar.gz"
// gtdb_db = "s3://ngi-igenomes/test-data/mag/gtdbtk_r214_data.tar.gz" ## This should be updated to release 220, once we get GTDB-Tk working again
skip_gtdbtk = true
gtdb_db = "s3://ngi-igenomes/test-data/mag/gtdbtk_r220_data.tar.gz"

// TODO TEMPORARY: deactivate SPAdes due to incompatibility of container with fusion file system
skip_spades = true
Expand Down
Loading