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Change pipeline name to nf-core/spatialvi #1185

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merged 2 commits into from
Apr 18, 2024

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fasterius
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As per discussions in the nf-core community, this commit changes the name of the pipeline from nf-core/spatialtranscriptomics to nf-core/spatialvi. Relevant PR is at nf-core/spatialvi#77.

This PR also updates the documentation to reflect the changes previously introduced, but where the documentation was not updated.

Not sure if (1) merging this PR into the existing spatialtranscriptomics branch and renaming it, or (2) creating a new branch with the spatialvi name and deleting the old one is the best way to go. Thoughts?

Update the README documentation to be accurate for what is actually in
used since PR nf-core#934 (nf-core#934).
@maxulysse
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How about creating a new spatialvi branch out of spatialtranscriptomics, merging said PR in it, and keeping the old one for reproducibility purpose if people are still using older versions of the pipeline.

@fasterius fasterius changed the base branch from spatialtranscriptomics to spatialvi April 18, 2024 08:43
@fasterius
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Excellent idea! I created a new branch and changed the target. I'll also do a separate PR for the documentation updates to the original branch, so that it's accurate.

@fasterius fasterius marked this pull request as ready for review April 18, 2024 08:44
@fasterius fasterius merged commit ff0a946 into nf-core:spatialvi Apr 18, 2024
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2 participants