Skip to content

Commit

Permalink
Merge pull request #292 from obophenotype/10072024
Browse files Browse the repository at this point in the history 
Oligodendrocytes incorrectly classed as oligodendrocyte precursor cell
  • Loading branch information
@hkir-dev
hkir-dev authored Jul 11, 2024
2 parents 1353942 + d7043df commit 5a7c80e
Show file tree
Hide file tree
Showing 22 changed files with 13,517 additions and 12,914 deletions.
8,263 changes: 4,189 additions & 4,074 deletions bdso-allen.owl
View file

Large diffs are not rendered by default.

22 changes: 11 additions & 11 deletions bdso-base.json
View file
Original file line number Diff line number Diff line change
Expand Up @@ -13,9 +13,9 @@
"val" : "http://creativecommons.org/licenses/by/4.0/"
}, {
"pred" : "http://www.w3.org/2002/07/owl#versionInfo",
"val" : "2024-07-10"
"val" : "2024-07-11"
} ],
"version" : "http://purl.obolibrary.org/obo/pcl/releases/2024-07-10/bdso-base.json"
"version" : "http://purl.obolibrary.org/obo/pcl/releases/2024-07-11/bdso-base.json"
},
"nodes" : [ {
"id" : "http://purl.obolibrary.org/obo/PCL_0011000",
Expand Down Expand Up @@ -95110,16 +95110,16 @@
}
}, {
"id" : "http://purl.obolibrary.org/obo/PCL_0015079",
"lbl" : "Oligo L2-6 OPALIN MAP6D1 primary motor cortex oligodendrocyte precursor cell (Hsap)",
"lbl" : "Oligo L2-6 OPALIN MAP6D1 primary motor cortex oligodendrocyte (Hsap)",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A oligodendrocyte precursor cell of the Homo sapiens primary motor cortex. These cells can be distinguished from other cells in the primary motor cortex by their selective expression of LINC01378 (Hsap), MBP (Hsap), ENPP2 (Hsap), ST18 (Hsap). These cells also express OPALIN (Hsap), MAP6D1 (Hsap). The reference data for this cell type is CS201912131_79.",
"val" : "A oligodendrocyte of the Homo sapiens primary motor cortex. These cells can be distinguished from other cells in the primary motor cortex by their selective expression of LINC01378 (Hsap), MBP (Hsap), ENPP2 (Hsap), ST18 (Hsap). These cells also express OPALIN (Hsap), MAP6D1 (Hsap). The reference data for this cell type is CS201912131_79.",
"xrefs" : [ "PMID:34616062" ]
},
"synonyms" : [ {
"pred" : "hasExactSynonym",
"val" : "LINC01378 (Hsap), MBP (Hsap), ENPP2 (Hsap), ST18 (Hsap) expressing oligodendrocyte precursor cell of primary motor cortex (Homo sapiens)"
"val" : "LINC01378 (Hsap), MBP (Hsap), ENPP2 (Hsap), ST18 (Hsap) expressing oligodendrocyte of primary motor cortex (Homo sapiens)"
}, {
"pred" : "hasExactSynonym",
"val" : "Oligo L2-6 OPALIN MAP6D1"
Expand Down Expand Up @@ -96436,16 +96436,16 @@
}
}, {
"id" : "http://purl.obolibrary.org/obo/PCL_0015119",
"lbl" : "Oligo L3-6 OPALIN-like ENPP6 primary motor cortex oligodendrocyte precursor cell (Hsap)",
"lbl" : "Oligo L3-6 OPALIN-like ENPP6 primary motor cortex oligodendrocyte (Hsap)",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A oligodendrocyte precursor cell of the Homo sapiens primary motor cortex. These cells can be distinguished from other cells in the primary motor cortex by their selective expression of LOC101927199 (Hsap), ST18 (Hsap), LRRC63 (Hsap), S100B (Hsap), CDK18 (Hsap). These cells also express ENPP6 (Hsap). The reference data for this cell type is CS201912131_119.",
"val" : "A oligodendrocyte of the Homo sapiens primary motor cortex. These cells can be distinguished from other cells in the primary motor cortex by their selective expression of LOC101927199 (Hsap), ST18 (Hsap), LRRC63 (Hsap), S100B (Hsap), CDK18 (Hsap). These cells also express ENPP6 (Hsap). The reference data for this cell type is CS201912131_119.",
"xrefs" : [ "PMID:34616062" ]
},
"synonyms" : [ {
"pred" : "hasExactSynonym",
"val" : "LOC101927199 (Hsap), ST18 (Hsap), LRRC63 (Hsap), S100B (Hsap), CDK18 (Hsap) expressing oligodendrocyte precursor cell of primary motor cortex (Homo sapiens)"
"val" : "LOC101927199 (Hsap), ST18 (Hsap), LRRC63 (Hsap), S100B (Hsap), CDK18 (Hsap) expressing oligodendrocyte of primary motor cortex (Homo sapiens)"
}, {
"pred" : "hasExactSynonym",
"val" : "Oligo L3-6 OPALIN-like ENPP6"
Expand Down Expand Up @@ -96478,16 +96478,16 @@
}
}, {
"id" : "http://purl.obolibrary.org/obo/PCL_0015120",
"lbl" : "Oligo L2-6 OPALIN FTH1P3 primary motor cortex oligodendrocyte precursor cell (Hsap)",
"lbl" : "Oligo L2-6 OPALIN FTH1P3 primary motor cortex oligodendrocyte (Hsap)",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A oligodendrocyte precursor cell of the Homo sapiens primary motor cortex. These cells can be distinguished from other cells in the primary motor cortex by their selective expression of LOC101927459 (Hsap), ENPP2 (Hsap). These cells also express OPALIN (Hsap), FTH1P3 (Hsap). The reference data for this cell type is CS201912131_120.",
"val" : "A oligodendrocyte of the Homo sapiens primary motor cortex. These cells can be distinguished from other cells in the primary motor cortex by their selective expression of LOC101927459 (Hsap), ENPP2 (Hsap). These cells also express OPALIN (Hsap), FTH1P3 (Hsap). The reference data for this cell type is CS201912131_120.",
"xrefs" : [ "PMID:34616062" ]
},
"synonyms" : [ {
"pred" : "hasExactSynonym",
"val" : "LOC101927459 (Hsap), ENPP2 (Hsap) expressing oligodendrocyte precursor cell of primary motor cortex (Homo sapiens)"
"val" : "LOC101927459 (Hsap), ENPP2 (Hsap) expressing oligodendrocyte of primary motor cortex (Homo sapiens)"
}, {
"pred" : "hasExactSynonym",
"val" : "Oligo L2-6 OPALIN FTH1P3"
Expand Down
26 changes: 13 additions & 13 deletions bdso-base.obo
View file
Original file line number Diff line number Diff line change
@@ -1,10 +1,10 @@
format-version: 1.2
data-version: pcl/releases/2024-07-10/bdso-base.owl
data-version: pcl/releases/2024-07-11/bdso-base.owl
ontology: pcl/bdso-base
property_value: http://purl.org/dc/elements/1.1/title "Brain Data Standards Cell Ontology" xsd:string
property_value: http://purl.org/dc/elements/1.1/type IAO:8000001
property_value: http://purl.org/dc/terms/license http://creativecommons.org/licenses/by/4.0/
property_value: owl:versionInfo "2024-07-10" xsd:string
property_value: owl:versionInfo "2024-07-11" xsd:string

[Term]
id: CL:4023119
Expand Down Expand Up @@ -8239,7 +8239,7 @@ relationship: RO:0002292 http://identifiers.org/ensembl/ENSMUSG00000039316 ! exp
relationship: RO:0002292 http://identifiers.org/ensembl/ENSMUSG00000050121 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSMUSG00000111994 ! expresses
relationship: RO:0015004 PCL:0012599 ! has characterizing marker set NS forest marker set of Oligo Opalin_1 MOp (Mouse).
relationship: RO:HOM0000007 PCL:0015119 ! Oligo L3-6 OPALIN-like ENPP6 primary motor cortex oligodendrocyte precursor cell (Hsap)
relationship: RO:HOM0000007 PCL:0015119 ! Oligo L3-6 OPALIN-like ENPP6 primary motor cortex oligodendrocyte (Hsap)
relationship: RO:HOM0000007 PCL:0019084 ! Oligo OPALIN MOBP primary motor cortex oligodendrocyte (Cjac)
property_value: IAO:0000028 "Oligo Opalin_1 MOp (Mouse)" xsd:string
property_value: PCL:0010058 "A330049N07Rik (Mmus)" xsd:string
Expand Down Expand Up @@ -12394,9 +12394,9 @@ property_value: prefLabel "Exc L3 LAMP5 CARM1P1" xsd:string

[Term]
id: PCL:0015079
name: Oligo L2-6 OPALIN MAP6D1 primary motor cortex oligodendrocyte precursor cell (Hsap)
def: "A oligodendrocyte precursor cell of the Homo sapiens primary motor cortex. These cells can be distinguished from other cells in the primary motor cortex by their selective expression of LINC01378 (Hsap), MBP (Hsap), ENPP2 (Hsap), ST18 (Hsap). These cells also express OPALIN (Hsap), MAP6D1 (Hsap). The reference data for this cell type is CS201912131_79." [PMID:34616062]
synonym: "LINC01378 (Hsap), MBP (Hsap), ENPP2 (Hsap), ST18 (Hsap) expressing oligodendrocyte precursor cell of primary motor cortex (Homo sapiens)" EXACT []
name: Oligo L2-6 OPALIN MAP6D1 primary motor cortex oligodendrocyte (Hsap)
def: "A oligodendrocyte of the Homo sapiens primary motor cortex. These cells can be distinguished from other cells in the primary motor cortex by their selective expression of LINC01378 (Hsap), MBP (Hsap), ENPP2 (Hsap), ST18 (Hsap). These cells also express OPALIN (Hsap), MAP6D1 (Hsap). The reference data for this cell type is CS201912131_79." [PMID:34616062]
synonym: "LINC01378 (Hsap), MBP (Hsap), ENPP2 (Hsap), ST18 (Hsap) expressing oligodendrocyte of primary motor cortex (Homo sapiens)" EXACT []
synonym: "Oligo L2-6 OPALIN MAP6D1" EXACT []
is_a: CL:0000128
relationship: BFO:0000050 UBERON:0001384
Expand Down Expand Up @@ -13260,9 +13260,9 @@ property_value: prefLabel "OPC L1-6 PDGFRA COL20A1" xsd:string

[Term]
id: PCL:0015119
name: Oligo L3-6 OPALIN-like ENPP6 primary motor cortex oligodendrocyte precursor cell (Hsap)
def: "A oligodendrocyte precursor cell of the Homo sapiens primary motor cortex. These cells can be distinguished from other cells in the primary motor cortex by their selective expression of LOC101927199 (Hsap), ST18 (Hsap), LRRC63 (Hsap), S100B (Hsap), CDK18 (Hsap). These cells also express ENPP6 (Hsap). The reference data for this cell type is CS201912131_119." [PMID:34616062]
synonym: "LOC101927199 (Hsap), ST18 (Hsap), LRRC63 (Hsap), S100B (Hsap), CDK18 (Hsap) expressing oligodendrocyte precursor cell of primary motor cortex (Homo sapiens)" EXACT []
name: Oligo L3-6 OPALIN-like ENPP6 primary motor cortex oligodendrocyte (Hsap)
def: "A oligodendrocyte of the Homo sapiens primary motor cortex. These cells can be distinguished from other cells in the primary motor cortex by their selective expression of LOC101927199 (Hsap), ST18 (Hsap), LRRC63 (Hsap), S100B (Hsap), CDK18 (Hsap). These cells also express ENPP6 (Hsap). The reference data for this cell type is CS201912131_119." [PMID:34616062]
synonym: "LOC101927199 (Hsap), ST18 (Hsap), LRRC63 (Hsap), S100B (Hsap), CDK18 (Hsap) expressing oligodendrocyte of primary motor cortex (Homo sapiens)" EXACT []
synonym: "Oligo L3-6 OPALIN-like ENPP6" EXACT []
synonym: "Oligo_1" EXACT []
is_a: CL:0000128
Expand All @@ -13287,9 +13287,9 @@ property_value: prefLabel "Oligo L3-6 OPALIN-like ENPP6" xsd:string

[Term]
id: PCL:0015120
name: Oligo L2-6 OPALIN FTH1P3 primary motor cortex oligodendrocyte precursor cell (Hsap)
def: "A oligodendrocyte precursor cell of the Homo sapiens primary motor cortex. These cells can be distinguished from other cells in the primary motor cortex by their selective expression of LOC101927459 (Hsap), ENPP2 (Hsap). These cells also express OPALIN (Hsap), FTH1P3 (Hsap). The reference data for this cell type is CS201912131_120." [PMID:34616062]
synonym: "LOC101927459 (Hsap), ENPP2 (Hsap) expressing oligodendrocyte precursor cell of primary motor cortex (Homo sapiens)" EXACT []
name: Oligo L2-6 OPALIN FTH1P3 primary motor cortex oligodendrocyte (Hsap)
def: "A oligodendrocyte of the Homo sapiens primary motor cortex. These cells can be distinguished from other cells in the primary motor cortex by their selective expression of LOC101927459 (Hsap), ENPP2 (Hsap). These cells also express OPALIN (Hsap), FTH1P3 (Hsap). The reference data for this cell type is CS201912131_120." [PMID:34616062]
synonym: "LOC101927459 (Hsap), ENPP2 (Hsap) expressing oligodendrocyte of primary motor cortex (Homo sapiens)" EXACT []
synonym: "Oligo L2-6 OPALIN FTH1P3" EXACT []
is_a: CL:0000128
relationship: BFO:0000050 UBERON:0001384
Expand Down Expand Up @@ -17220,7 +17220,7 @@ relationship: RO:0002292 http://identifiers.org/ncbigene/100402879 ! expresses
relationship: RO:0002292 http://identifiers.org/ncbigene/100404930 {xref="PMID:34616066"} ! expresses
relationship: RO:0015004 PCL:0020584 ! has characterizing marker set NS forest marker set of Oligo OPALIN MOBP M1 (Marmoset).
relationship: RO:HOM0000007 PCL:0011099 ! Oligo Opalin_1 primary motor cortex oligodendrocyte (Mmus)
relationship: RO:HOM0000007 PCL:0015119 ! Oligo L3-6 OPALIN-like ENPP6 primary motor cortex oligodendrocyte precursor cell (Hsap)
relationship: RO:HOM0000007 PCL:0015119 ! Oligo L3-6 OPALIN-like ENPP6 primary motor cortex oligodendrocyte (Hsap)
property_value: IAO:0000028 "Oligo OPALIN MOBP M1 (Marmoset)" xsd:string
property_value: PCL:0010058 "ANLN (Cjac)" xsd:string
property_value: PCL:0010058 "MOBP (Cjac)" xsd:string
Expand Down
Loading

0 comments on commit 5a7c80e

Please sign in to comment.