[NTR] Pax6 GABAergic cortical interneuron (#2643)

* [NTR] Pax6 GABAergic cortical interneuron Fixes #2595 * [NTR] Pax6 GABAergic cortical interneuron Fixes #2595 * [NTR] Pax6 GABAergic cortical interneuron Fixes #2595 * [NTR] Pax6 GABAergic cortical interneuron Fixes #2595 * [NTR] Pax6 GABAergic cortical interneuron Fixes #2595 * change references * Fix conflicts
obophenotype · Oct 17, 2024 · b68eeb2 · b68eeb2
1 parent 1a35229
commit b68eeb2
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Showing 4 changed files with 19 additions and 4 deletions.
diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl
@@ -3073,6 +3073,7 @@ Declaration(Class(obo:CL_4042025))
 Declaration(Class(obo:CL_4042026))
 Declaration(Class(obo:CL_4042027))
 Declaration(Class(obo:CL_4042031))
+Declaration(Class(obo:CL_4042032))
 Declaration(Class(obo:CL_4047006))
 Declaration(Class(obo:CL_4047007))
 Declaration(Class(obo:CL_4047011))
@@ -3164,6 +3165,7 @@ Declaration(Class(obo:PR_000007489))
 Declaration(Class(obo:PR_000007785))
 Declaration(Class(obo:PR_000009981))
 Declaration(Class(obo:PR_000010529))
+Declaration(Class(obo:PR_000012318))
 Declaration(Class(obo:PR_000013047))
 Declaration(Class(obo:PR_000013433))
 Declaration(Class(obo:PR_000013502))
@@ -32541,6 +32543,18 @@ SubClassOf(obo:CL_4042031 obo:CL_0000128)
 SubClassOf(obo:CL_4042031 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002453))
 SubClassOf(obo:CL_4042031 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002504))
 
+# Class: obo:CL_4042032 (PAX6 GABAergic cortical interneuron)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37824655") Annotation(oboInOwl:hasDbXref "https://cellxgene.cziscience.com/e/e4ddac12-f48f-4455-8e8d-c2a48a683437.cxg/") obo:IAO_0000115 obo:CL_4042032 "A transcriptomically distinct GABAergic neuron located in the cerebral cortex that expresses the transcript PAX6. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters PAX6.")
+AnnotationAssertion(terms:contributor obo:CL_4042032 <https://orcid.org/0000-0002-0098-8958>)
+AnnotationAssertion(terms:date obo:CL_4042032 "2024-10-11T13:25:51Z"^^xsd:dateTime)
+AnnotationAssertion(rdfs:label obo:CL_4042032 "PAX6 GABAergic cortical interneuron"@en)
+SubClassOf(obo:CL_4042032 obo:CL_0000099)
+SubClassOf(obo:CL_4042032 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956))
+SubClassOf(obo:CL_4042032 ObjectSomeValuesFrom(obo:RO_0002202 obo:UBERON_0004026))
+SubClassOf(obo:CL_4042032 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534))
+SubClassOf(obo:CL_4042032 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000012318))
+
 # Class: obo:CL_4047006 (fetal artery endothelial cell)
 
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34497389") obo:IAO_0000115 obo:CL_4047006 "An endothelial cell that lines an artery in the fetal circulatory system.")

diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/cl/imports/merged_import.owl>
-<http://purl.obolibrary.org/obo/cl/releases/2024-10-09/imports/merged_import.owl>
-Annotation(owl:versionInfo "2024-10-09")
+<http://purl.obolibrary.org/obo/cl/releases/2024-10-14/imports/merged_import.owl>
+Annotation(owl:versionInfo "2024-10-14")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000003>))

diff --git a/src/ontology/imports/pr_terms.txt b/src/ontology/imports/pr_terms.txt
@@ -46,3 +46,4 @@ PR:000014898
 PR:000007643
 PR:000004691
 PR:000013047
+PR:000012318
diff --git a/src/patterns/definitions.owl b/src/patterns/definitions.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/cl/patterns/definitions.owl>
-<http://purl.obolibrary.org/obo/cl/releases/2024-10-09/patterns/definitions.owl>
-Annotation(owl:versionInfo "2024-10-09")
+<http://purl.obolibrary.org/obo/cl/releases/2024-10-14/patterns/definitions.owl>
+Annotation(owl:versionInfo "2024-10-14")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000031>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000084>))