Addresses #2786 NTR CD57-positive enterocyte (#2847)

* Addresses #2786 NTR CD57-positive enterocyte Fixes #2786 NTR CD57-positive enterocyte * Fixes typo --------- Co-authored-by: CEastwood <[email protected]>
obophenotype · Dec 20, 2024 · e9b9108 · e9b9108
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diff --git a/src/mappings/fbbt.sssom.tsv b/src/mappings/fbbt.sssom.tsv
@@ -1,17 +1,17 @@
 #curie_map:
-#  CL: "http://purl.obolibrary.org/obo/CL_"
-#  FBbt: "http://purl.obolibrary.org/obo/FBbt_"
-#  ORCID: "https://orcid.org/"
-#  obo: "http://purl.obolibrary.org/obo/"
-#mapping_set_id: "http://purl.obolibrary.org/obo/fbbt/fbbt-mappings.sssom.tsv"
-#mapping_set_description: "Mappings between the Drosophila Anatomy Ontology and foreign ontologies."
+#  CL: http://purl.obolibrary.org/obo/CL_
+#  FBbt: http://purl.obolibrary.org/obo/FBbt_
+#  ORCID: https://orcid.org/
+#  obo: http://purl.obolibrary.org/obo/
+#mapping_set_id: http://purl.obolibrary.org/obo/fbbt/fbbt-mappings.sssom.tsv
+#mapping_set_description: Mappings between the Drosophila Anatomy Ontology and foreign ontologies.
 #creator_id:
-#  - "ORCID:0000-0002-1373-1705"
-#  - "ORCID:0000-0002-6095-8718"
-#license: "https://creativecommons.org/licenses/by/4.0/"
-#subject_source: "obo:fbbt.owl"
-#object_source: "obo:cl.owl"
-#mapping_date: "2024-07-12"
+#  - ORCID:0000-0002-1373-1705
+#  - ORCID:0000-0002-6095-8718
+#license: https://creativecommons.org/licenses/by/4.0/
+#subject_source: obo:fbbt.owl
+#object_source: obo:cl.owl
+#mapping_date: 2024-07-12
 subject_id	subject_label	predicate_id	object_id	object_label	mapping_justification
 FBbt:00000092	primordial germ cell	semapv:crossSpeciesExactMatch	CL:0000301	pole cell	semapv:ManualMappingCuration
 FBbt:00000124	epithelial cell	semapv:crossSpeciesExactMatch	CL:0000066	epithelial cell	semapv:ManualMappingCuration

diff --git a/src/mappings/zfa.sssom.tsv b/src/mappings/zfa.sssom.tsv
@@ -1,10 +1,10 @@
 #curie_map:
-#  CL: "http://purl.obolibrary.org/obo/CL_"
-#  ZFA: "http://purl.obolibrary.org/obo/ZFA_"
-#mapping_set_id: "http://purl.obolibrary.org/obo/zfa/zfa.sssom.tsv"
-#license: "https://creativecommons.org/licenses/by/3.0/"
-#subject_source: "http://purl.obolibrary.org/obo/zfa.owl"
-#object_source: "http://purl.obolibrary.org/obo/cl.owl"
+#  CL: http://purl.obolibrary.org/obo/CL_
+#  ZFA: http://purl.obolibrary.org/obo/ZFA_
+#mapping_set_id: http://purl.obolibrary.org/obo/zfa/zfa.sssom.tsv
+#license: https://creativecommons.org/licenses/by/3.0/
+#subject_source: http://purl.obolibrary.org/obo/zfa.owl
+#object_source: http://purl.obolibrary.org/obo/cl.owl
 subject_id	subject_label	predicate_id	object_id	object_label	mapping_justification
 ZFA:0000003	adaxial cell	semapv:crossSpeciesExactMatch	CL:0007016	adaxial cell	semapv:UnspecifiedMatching
 ZFA:0000084	yolk	semapv:crossSpeciesExactMatch	CL:0000428	yolk cell	semapv:UnspecifiedMatching
@@ -20,7 +20,7 @@ ZFA:0005238	juxtaglomerular cell	semapv:crossSpeciesExactMatch	CL:0000648	kidney
 ZFA:0005239	micropylar cell	semapv:crossSpeciesExactMatch	CL:0007022	micropylar cell	semapv:UnspecifiedMatching
 ZFA:0005240	Kolmer-Agduhr neuron	semapv:crossSpeciesExactMatch	CL:0005007	Kolmer-Agduhr neuron	semapv:UnspecifiedMatching
 ZFA:0005241	polychromatophilic erythroblast	semapv:crossSpeciesExactMatch	CL:0000550	polychromatophilic erythroblast	semapv:UnspecifiedMatching
-ZFA:0005242	multi-ciliated epithelial cell	semapv:crossSpeciesExactMatch	CL:0005012	multi-ciliated epithelial cell	semapv:UnspecifiedMatching
+ZFA:0005242	multi-ciliated epithelial cell	semapv:crossSpeciesExactMatch	CL:0005012	multiciliated epithelial cell	semapv:UnspecifiedMatching
 ZFA:0005243	single ciliated epithelial cell	semapv:crossSpeciesExactMatch	CL:0005013	single ciliated epithelial cell	semapv:UnspecifiedMatching
 ZFA:0005244	auditory epithelial support cell	semapv:crossSpeciesExactMatch	CL:0005014	auditory epithelial supporting cell	semapv:UnspecifiedMatching
 ZFA:0005245	xanthoblast	semapv:crossSpeciesExactMatch	CL:0005002	xanthoblast	semapv:UnspecifiedMatching

diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl
@@ -3045,6 +3045,7 @@ Declaration(Class(obo:CL_4033088))
 Declaration(Class(obo:CL_4033089))
 Declaration(Class(obo:CL_4033090))
 Declaration(Class(obo:CL_4033091))
+Declaration(Class(obo:CL_4033092))
 Declaration(Class(obo:CL_4033093))
 Declaration(Class(obo:CL_4040000))
 Declaration(Class(obo:CL_4040001))
@@ -3381,7 +3382,7 @@ AnnotationAssertion(rdfs:label obo:IAO_0000115 "definition")
 
 AnnotationAssertion(rdfs:label obo:IAO_0000424 "expand expression to")
 
-# Annotation Property: obo:IAO_0000700 (preferred_root)
+# Annotation Property: obo:IAO_0000700 (has ontology root term)
 
 AnnotationAssertion(rdfs:label obo:IAO_0000700 "preferred_root")
 
@@ -3467,15 +3468,15 @@ AnnotationAssertion(rdfs:label oboInOwl:consider "consider")
 
 AnnotationAssertion(rdfs:label oboInOwl:hasBroadSynonym "has_broad_synonym")
 
-# Annotation Property: oboInOwl:hasDbXref (database_cross_reference)
+# Annotation Property: oboInOwl:hasDbXref (has cross-reference)
 
 AnnotationAssertion(rdfs:label oboInOwl:hasDbXref "database_cross_reference")
 
-# Annotation Property: oboInOwl:hasExactSynonym (has_exact_synonym)
+# Annotation Property: oboInOwl:hasExactSynonym (has exact synonym)
 
 AnnotationAssertion(rdfs:label oboInOwl:hasExactSynonym "has_exact_synonym")
 
-# Annotation Property: oboInOwl:hasNarrowSynonym (has_narrow_synonym)
+# Annotation Property: oboInOwl:hasNarrowSynonym (has narrow synonym)
 
 AnnotationAssertion(rdfs:label oboInOwl:hasNarrowSynonym "has_narrow_synonym")
 
@@ -32366,6 +32367,18 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37124720") oboInOwl:hasE
 AnnotationAssertion(rdfs:label obo:CL_4033091 "glycinergic-GABAergic amacrine cell")
 EquivalentClasses(obo:CL_4033091 ObjectIntersectionOf(obo:CL_0000561 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061537)))
 
+# Class: obo:CL_4033092 (CD57-positive enterocyte)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37468586") obo:IAO_0000115 obo:CL_4033092 "An enterocyte that is part of a duodenal epithelium and expresses beta-1,3-glucuronyltransferase 1 (B3GAT1), also known as CD57 or HNK-1.")
+AnnotationAssertion(terms:contributor obo:CL_4033092 <https://orcid.org/0000-0001-6677-8489>)
+AnnotationAssertion(terms:contributor obo:CL_4033092 <https://orcid.org/0000-0001-7655-4833>)
+AnnotationAssertion(terms:contributor obo:CL_4033092 <https://orcid.org/0000-0001-9961-7673>)
+AnnotationAssertion(terms:date obo:CL_4033092 "2024-12-06T14:32:49Z"^^xsd:dateTime)
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37468586") oboInOwl:hasExactSynonym obo:CL_4033092 "CD57+ enterocyte")
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37468586") rdfs:comment obo:CL_4033092 "While CD57 is traditionally associated with immune cells (e.g., NK cells), its expression on enterocytes marks unique epithelial subsets with specific functions or maturation states. These cells are specially enriched in areas of the duodenum within submucosal glands.")
+AnnotationAssertion(rdfs:label obo:CL_4033092 "CD57-positive enterocyte")
+EquivalentClasses(obo:CL_4033092 ObjectIntersectionOf(obo:CL_0000584 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008346) ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000001440)))
+
 # Class: obo:CL_4033093 (limbal epithelial stem cell of cornea)
 
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:20614614") Annotation(oboInOwl:hasDbXref "PMID:29105366") Annotation(oboInOwl:hasDbXref "PMID:36983561") Annotation(oboInOwl:hasDbXref "PMID:37768272") obo:IAO_0000115 obo:CL_4033093 "A stem cell that is part of the corneo-scleral limbus. This cell type resides at the basal layer of the epithelium and has a small size and high nuclear to cytoplasmatic ratio (Secker and Daniels, 2009). A limbal stem cell is responsible for corneal epithelial renewal and repair (Li et al., 2023), and to help maintain a clear corneal surface by preventing conjunctival epithelial cells from migrating onto the cornea (Wang et al., 2023).")