pom: remove the bigwig dependency

opencb · Mar 22, 2022 · 4e594f6 · 4e594f6
1 parent 1bf4292
commit 4e594f6
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Showing 3 changed files with 6 additions and 21 deletions.
diff --git a/cellbase-core/pom.xml b/cellbase-core/pom.xml
@@ -49,8 +49,7 @@
         </dependency>
         <dependency>
             <groupId>org.hamcrest</groupId>
-            <artifactId>hamcrest</artifactId>
-            <version>2.2</version>
+            <artifactId>hamcrest-all</artifactId>
             <scope>test</scope>
         </dependency>
     </dependencies>

diff --git a/cellbase-lib/pom.xml b/cellbase-lib/pom.xml
@@ -49,10 +49,6 @@
             <artifactId>poi-ooxml</artifactId>
             <version>4.1.2</version>
         </dependency>
-        <dependency>
-            <groupId>BigWig</groupId>
-            <artifactId>BigWig</artifactId>
-        </dependency>
         <dependency>
             <groupId>org.apache.logging.log4j</groupId>
             <artifactId>log4j-core</artifactId>

diff --git a/pom.xml b/pom.xml
@@ -34,7 +34,6 @@
         <junit.jupiter.version>5.5.2</junit.jupiter.version>
         <jacoco.version>0.8.5</jacoco.version>
         <jetty.version>9.4.17.v20190418</jetty.version>
-        <bigwig.version>1.0</bigwig.version>
 
         <CELLBASE.WAR.NAME>cellbase</CELLBASE.WAR.NAME>
         <checkstyle.config.location>checkstyle.xml</checkstyle.config.location>
@@ -64,6 +63,11 @@
             <name>Javier</name>
             <email>[email protected]</email>
         </developer>
+        <developer>
+            <id>jtarraga</id>
+            <name>Joaquin</name>
+            <email>[email protected]</email>
+        </developer>
         <developer>
             <id>julie-sullivan</id>
             <name>Julie</name>
@@ -85,11 +89,6 @@
                 <updatePolicy>daily</updatePolicy>
             </snapshots>
         </repository>
-        <!-- needed for bigwig -->
-        <repository>
-            <id>opencb-ext-libs</id>
-            <url>http://bioinfo.hpc.cam.ac.uk/downloads/ext-libs/</url>
-        </repository>
     </repositories>
 
     <dependencyManagement>
@@ -119,10 +118,6 @@
                         <artifactId>slf4j-simple</artifactId>
                         <groupId>org.slf4j</groupId>
                     </exclusion>
-                    <exclusion>
-                        <artifactId>BigWig</artifactId>
-                        <groupId>BigWig</groupId>
-                    </exclusion>
                     <exclusion>
                         <groupId>org.mortbay.jetty</groupId>
                         <artifactId>servlet-api</artifactId>
@@ -186,11 +181,6 @@
                 <artifactId>jersey-media-json-jackson</artifactId>
                 <version>${jersey.version}</version>
             </dependency>
-            <dependency>
-                <groupId>BigWig</groupId>
-                <artifactId>BigWig</artifactId>
-                <version>${bigwig.version}</version>
-            </dependency>
             <dependency>
                 <groupId>org.slf4j</groupId>
                 <artifactId>slf4j-api</artifactId>