Create code_clone_add_data.py

add data to STAC as test case for code clones

STAC/data/scripts/code_clone_add_data.py

@@ -0,0 +1,157 @@
+# created by Etiënne Kras, dd 24-04-2024
+# Script uses inspiration from https://github.com/stac-utils/stac-fastapi-elasticsearch-opensearch/blob/main/data_loader.py, also to align with the STAC URL from STAC-fastAPI.
+# Note, this script needs a dataset to be formatted into a collection & item structure already..
+# Note, ..
+
+import json
+from geojson import Feature, Point, FeatureCollection, Polygon
+import os
+
+import click
+import requests
+
+
+def load_data(data_dir, filename):
+    """Load json data from a file within the specified data directory."""
+    filepath = os.path.join(data_dir, filename)
+    if not os.path.exists(filepath):
+        click.secho(f"File not found: {filepath}", fg="red", err=True)
+        raise click.Abort()
+    with open(filepath) as file:
+        return json.load(file)
+
+
+def load_collection(base_url, collection_id, data_dir):
+    """Load a STAC collection into the database."""
+    collection = load_data(data_dir, "collection.json")
+    collection["id"] = collection_id
+    try:
+        resp = requests.post(f"{base_url}/collections", json=collection)
+        if resp.status_code == 200:
+            click.echo(f"Status code: {resp.status_code}")
+            click.echo(f"Added collection: {collection['id']}")
+        elif resp.status_code == 409:
+            click.echo(f"Status code: {resp.status_code}")
+            click.echo(f"Collection: {collection['id']} already exists")
+    except requests.ConnectionError:
+        click.secho("Failed to connect", fg="red", err=True)
+
+
+# Adjusted: added to remove collection from the catalog
+def load_items(base_url, collection_id, use_bulk, data_dir):
+    """Load STAC items into the database based on the method selected."""
+    # # Attempt to dynamically find a suitable feature collection file
+    # feature_files = [
+    #     file
+    #     for file in os.listdir(data_dir)
+    #     if file.endswith(".json") and file != "collection.json"
+    # ]
+    # if not feature_files:
+    #     click.secho(
+    #         "No feature collection files found in the specified directory.",
+    #         fg="red",
+    #         err=True,
+    #     )
+    # #     raise click.Abort()
+    # feature_collection_file = feature_files[
+    #     0
+    # ]  # Use the first found feature collection file
+    featurecol = []
+    for dir, fol, files in os.walk(data_dir):
+        for filename in files:
+            if filename.endswith(".json") and filename != "collection.json":
+                filepath = os.path.join(data_dir, dir, filename)
+                with open(filepath) as file:
+                    data = json.load(file)
+                    del data["properties"][
+                        "deltares:paint"
+                    ]  # remove the paint property, will be mapbox (redundant)
+                    featurecol.append(data)
+    feature_collection = FeatureCollection(featurecol)
+    # feature_collection = load_data(data_dir, feature_collection_file)
+
+    load_collection(base_url, collection_id, data_dir)
+    if use_bulk:
+        load_items_bulk_insert(base_url, collection_id, feature_collection, data_dir)
+    else:
+        load_items_one_by_one(base_url, collection_id, feature_collection, data_dir)
+
+
+def load_items_one_by_one(base_url, collection_id, feature_collection, data_dir):
+    """Load STAC items into the database one by one."""
+    for feature in feature_collection["features"]:
+        try:
+            feature["collection"] = collection_id
+            resp = requests.post(
+                f"{base_url}/collections/{collection_id}/items", json=feature
+            )
+            if resp.status_code == 200:
+                click.echo(f"Status code: {resp.status_code}")
+                click.echo(f"Added item: {feature['id']}")
+            elif resp.status_code == 409:
+                click.echo(f"Status code: {resp.status_code}")
+                click.echo(f"Item: {feature['id']} already exists")
+        except requests.ConnectionError:
+            click.secho("Failed to connect", fg="red", err=True)
+
+
+def load_items_bulk_insert(base_url, collection_id, feature_collection, data_dir):
+    """Load STAC items into the database via bulk insert."""
+    try:
+        for i, _ in enumerate(feature_collection["features"]):
+            feature_collection["features"][i]["collection"] = collection_id
+        resp = requests.post(
+            f"{base_url}/collections/{collection_id}/items", json=feature_collection
+        )
+        if resp.status_code == 200:
+            click.echo(f"Status code: {resp.status_code}")
+            click.echo("Bulk inserted items successfully.")
+        elif resp.status_code == 204:
+            click.echo(f"Status code: {resp.status_code}")
+            click.echo("Bulk update successful, no content returned.")
+        elif resp.status_code == 409:
+            click.echo(f"Status code: {resp.status_code}")
+            click.echo("Conflict detected, some items might already exist.")
+    except requests.ConnectionError:
+        click.secho("Failed to connect", fg="red", err=True)
+
+
+# Adjusted: added to remove collection from the catalog
+def remove_collection(base_url, collection_id):
+    """Delete a STAC collection from the database."""
+    try:
+        resp = requests.delete(f"{base_url}/collections/{collection_id}")
+    except requests.ConnectionError:
+        click.secho("Failed to connect", fg="red", err=True)
+
+
+# @click.command()
+# @click.option("--base-url", required=True, help="Base URL of the STAC API")
+# @click.option(
+#     "--collection-id",
+#     default="test-collection",
+#     help="ID of the collection to which items are added",
+# )
+# @click.option("--use-bulk", is_flag=True, help="Use bulk insert method for items")
+# @click.option(
+#     "--data-dir",
+#     type=click.Path(exists=True),
+#     default="sample_data/",
+#     help="Directory containing collection.json and feature collection file",
+# )
+# def main(base_url, collection_id, use_bulk, data_dir):
+#     """Load STAC items into the database."""
+#     load_items(base_url, collection_id, use_bulk, data_dir)
+
+
+if __name__ == "__main__":
+    """Load STAC items into the database."""
+    base_url = "http://34.91.70.6:8080"  # URL of the (fast)STAC API
+    collection_id = "example-collection"
+    use_bulk = False
+    # data_dir = r"C:\Users\kras\Documents\GitHub\coclicodata\current\ssl"
+    data_dir = r"C:\Users\kras\Documents\GitHub\coclicodata\current\ssl"
+    # data_dir = r"C:\Users\kras\Documents\GitHub\stac-fastapi-elasticsearch-opensearch\sample_data"
+    load_items(base_url, collection_id, use_bulk, data_dir)
+
+    # remove_collection(base_url, collection_id)