Repositories list

• eddyrivaslab.github.io-src

  Public
  CSS

  •0•0•0•0•Updated Jan 16, 2025Jan 16, 2025

• eddyrivaslab.github.io

  Public
  HTML

  •0•0•0•0•Updated Jan 16, 2025Jan 16, 2025

• R-scape

  Public
  RNA Structural Covariation Above Phylogenetic Expectation

  C

  •

  Other

  •2•8•3•0•Updated Jan 16, 2025Jan 16, 2025

• hmmer

  Public
  HMMER: biological sequence analysis using profile HMMs

  C

  •

  Other

  •71•328•11•2•Updated Jan 15, 2025Jan 15, 2025

• easel

  Public
  Sequence analysis library used by Eddy/Rivas lab code

  C

  •

  Other

  •28•46•3•1•Updated Nov 25, 2024Nov 25, 2024

• labbib

  Public
  Lab's BibTex bibliography, and tools

  TeX

  •0•1•0•0•Updated Nov 19, 2024Nov 19, 2024

• infernal

  Public
  RNA secondary structure/sequence profiles for homology search and alignment

  C

  •

  Other

  •24•102•1•0•Updated Nov 8, 2024Nov 8, 2024

• R-scape-web

  Public
  RNA Structure-driven Covariation Above Phylogenetic Expectation (web application)

  JavaScript

  •1•3•0•0•Updated Feb 6, 2024Feb 6, 2024

• infernal.org

  Public
  Infernal's web page

  HTML

  •0•0•0•0•Updated Sep 11, 2023Sep 11, 2023

• hmmer.org

  Public
  HMMER home page

  HTML

  •0•0•0•0•Updated Aug 15, 2023Aug 15, 2023

• tornado

  Public
  A general purpose parser to produce grammars of single-sequence RNA secondary structure

  C

  •

  Other

  •1•1•0•0•Updated Apr 29, 2023Apr 29, 2023

• null-model

  Public
  Repository to hold work on a new null model for HMMER and Infernal

  C

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Feb 5, 2021Feb 5, 2021

• ssu-align

  Public
  Structural alignment of SSU rRNA sequences

  PostScript

  •0•4•3•0•Updated May 5, 2020May 5, 2020

• PKNOTS

  Public
  A dynamic programming algorithm for RNA pseudoknot prediction

  C

  •

  Other

  •0•0•0•0•Updated Jan 30, 2020Jan 30, 2020