Repositories list

• rilab.github.io

  Public
  Ross-Ibarra Lab at UC Davis

  HTML

  •7•1•0•0•Updated Jan 9, 2025Jan 9, 2025

• statements

  Public
  Successful Job Applications and Grants

  Other

  •130•728•0•0•Updated Jan 2, 2025Jan 2, 2025

• rilab_template

  Public
  TeX

  •0•0•0•0•Updated Jul 2, 2024Jul 2, 2024

• lab-docs

  Public
  The Ross-Ibarra's lab documentation

  HTML

  •5•26•3•0•Updated Aug 4, 2022Aug 4, 2022

• mop

  Public
  Simple tool for capturing alignment regions with sufficient quality for genotyping.

  Python

  •

  GNU General Public License v3.0

  •3•22•1•0•Updated Aug 20, 2021Aug 20, 2021

• BGS_sims

  Public
  Simulation of background selection in non equilibrium populations

  HTML

  •1•0•0•0•Updated May 31, 2019May 31, 2019

• IAmSam

  Public
  forward simulation of indel associated mutation model

  C++

  •0•0•0•0•Updated May 5, 2019May 5, 2019

• BGS_demo

  Public
  TeX

  •0•0•0•1•Updated Apr 11, 2019Apr 11, 2019

• discoal

  Public
  discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples

  TeX

  •

  GNU General Public License v3.0

  •10•0•0•0•Updated Mar 20, 2019Mar 20, 2019

• synthetic_load

  Public
  Shell

  •0•1•0•0•Updated Feb 8, 2019Feb 8, 2019

• PHS_statistic

  Public
  code to calculate pairwise haplotype statistic

  Perl

  •1•1•0•0•Updated Jan 23, 2019Jan 23, 2019

• beissinger_ms

  Public
  TeX

  •

  Other

  •0•0•0•0•Updated Dec 9, 2018Dec 9, 2018

• AJB_MutationalTargetSize_GenomeSize

  Public
  HTML

  •0•1•0•0•Updated Jan 3, 2018Jan 3, 2018

• Policies

  Public
  Lab policies and operating procedures

  15•0•0•0•Updated Dec 7, 2017Dec 7, 2017

• fwdpy11

  Public
  Forward-time simulation in Python using fwdpp

  C++

  •

  GNU General Public License v3.0

  •6•0•0•0•Updated Aug 2, 2017Aug 2, 2017

• ZeaBigData.github.io

  Public
  web site of zea big data

  CSS

  •

  MIT License

  •12•0•0•0•Updated Feb 9, 2017Feb 9, 2017

• pdf2pdf

  Public
  does the magical pdf-to-pdf conversion popular in academic journal submission sites

  Shell

  •9•0•0•0•Updated Sep 27, 2016Sep 27, 2016

• bis101

  Public
  bis101

  R

  •0•0•0•0•Updated Aug 9, 2016Aug 9, 2016

• fruitcase

  Public
  TeX

  •0•0•0•0•Updated Jul 16, 2016Jul 16, 2016

• methylation

  Public
  HTML

  •1•1•0•0•Updated Jul 14, 2016Jul 14, 2016

• Maize-Teo-Scripts

  Public
  R

  •8•0•0•0•Updated Dec 2, 2015Dec 2, 2015

• NSF_PRFB_PlantGenome

  Public
  Application for NSF Post-doc fellowship

  TeX

  •2•0•0•0•Updated Nov 3, 2015Nov 3, 2015

• historical_genomics

  Public
  maize historical genomics

  R

  •4•5•0•0•Updated Sep 25, 2015Sep 25, 2015

• peachy

  Public
  peach & almond domestication

  TeX

  •0•0•0•0•Updated Aug 25, 2015Aug 25, 2015

• ProgenyArray

  Public
  An R package to work with half-sib progeny array data

  R

  •4•0•0•0•Updated Jul 20, 2015Jul 20, 2015

• bneck

  Public
  C++

  •0•0•0•0•Updated Jun 18, 2015Jun 18, 2015

• tasselr

  Public
  Some beta interfaces to Tassel's GBS data on HDF5

  R

  •2•0•0•0•Updated May 15, 2015May 15, 2015

• rmin_cut

  Public
  Slice a sequence based on 4-gamete test

  Perl

  •2•0•0•0•Updated May 5, 2015May 5, 2015

• Plant3G

  Public
  Plant GWA (genome-wide analysis), GEP (genomic-enable prediction) and GE (genome evolution) toolset

  Python

  •

  Other

  •2•4•0•0•Updated Apr 27, 2015Apr 27, 2015

• hardyweinberg

  Public
  Code associated with Schraiber et al (2012), Genetics

  R

  •1•0•0•0•Updated Apr 27, 2015Apr 27, 2015