Converting country names to iso standard

[Kavlahkaff]

PR Checklist for modifying one or multiple existing packages

• The changes maintain the structural integrity of the affected packages.
• The checksums of the modified files in the respective POSEIDON.yml files were adjusted properly.
• Every file in the submission is correctly referenced in the relevant POSEIDON.yml files and there are no additional, supplementary files in the submission that are not documented there.

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• The packageVersion numbers of the affected packages were increased in their POSEIDON.yml files.
• The changes in the packageVersion followed the Poseidon Package versioning policy.
• The changes were documented in the respective CHANGELOG files. If no CHANGELOG files existed previously it was added here.
• The lastModified fields of the affected POSEIDON.yml files were updated.
• The contributor fields were updated with name, email and orcid of the relevant, new contributors.
• The .janno and the .ssf files are not fully quoted, so they only use single- or double quotes ("...", '...') to enclose text fields where it is strictly necessary (i.e. their entry includes a TAB).

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• All affected packages pass a validation with trident validate --fullGeno.

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• Large genotype data files are properly tracked with Git LFS and not directly pushed to the repository. For an instruction on how to set up Git LFS please look here. If you accidentally pushed the files the wrong way you can fix it with git lfs migrate import --no-rewrite path/to/file.bed (see here).

[Kavlahkaff]

I have now moved this PR to a branch in this repository, not from a fork. I ran trident rectify again to make all the changes necessary in the Poseidon.yml and changelog.md. I did not add myself as a contributor as my changes are very small. Should I delete the original PR?

[nevrome]

Thanks! #229 can indeed be deleted, if you have the same changes here now.

I looked through the PR and found it mostly OK. There is only one issue: 2024_Allentoft_PostGlacial_WestEurasia got a CHANGELOG file and an updated POSEIDON.yml file, but the .janno file of this package does not actually feature any changes.

[Kavlahkaff]

Oh, yes good catch! I have removed the changelog and reverted the Poseidon.yml

[stschiff]

OK, I also made some checks and find it OK. Thanks.

[nevrome]

OK - if we are all happy with these changes we can merge them. I'll do it now.