squash

.Rbuildignore

@@ -29,3 +29,14 @@
 ^vignettes/mapSpain\.Rmd\.orig$
 ^_pkgdown\.yaml$
 ^CITATION\.cff$
+^tests/testthat/_snaps/esp_getTiles$
+^tests/testthat/_snaps/layer_spatraster$
+^.*\.pdf$
+^CRAN-SUBMISSION$
+^pkgdown\.yaml$
+^pkgdown\.yml$
+^\.imgbotconfig$
+^\.lintr$
+^CODE_OF_CONDUCT\.md$
+^CONTRIBUTING\.md$
+^Rplots\.pdf$

.gitattributes

@@ -1,2 +1,2 @@
 *.html linguist-detectable=false
-*.js linguist-detectable=false
+*.js linguist-detectable=false

.github/.gitignore

@@ -1,3 +1,4 @@
 *.html
 R-version
 depends.Rds
+*.rds

.github/dependabot.yml

@@ -0,0 +1,16 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+
+# Basic set up for three package managers
+
+version: 2
+updates:
+
+  # Maintain dependencies for GitHub Actions
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "weekly"
+

.github/workflows/cff-validator.yml

@@ -11,17 +11,11 @@ jobs:
     name: Validate CITATION.cff
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-      RSPM: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"
 
     steps:
       - name: Checkout
-        uses: actions/checkout@v2
+        uses: actions/checkout@v4
 
-      # This is needed for workflows running on
-      # ubuntu-20.04 or later
-      - name: Install V8
-        if: runner.os == 'Linux'
-        run: |
-          sudo apt-get install -y libv8-dev
       - name: Validate CITATION.cff
         uses: dieghernan/cff-validator@main
+

.github/workflows/check-full.yaml

@@ -10,7 +10,7 @@ on:
   pull_request:
     branches: [main, master]
   schedule:
-    - cron:  '0 14 * * 2,5'
+    - cron:  '0 14 * * 2,5'
 
 name: R-CMD-check
 
@@ -24,51 +24,36 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - {os: windows-latest, r: 'devel'}
+          #- {os: windows-latest, r: 'devel'}
           - {os: windows-latest, r: 'release'}
           - {os: windows-latest, r: 'oldrel'}
           #- {os: macOS-latest, r: 'devel'}
           - {os: macOS-latest, r: 'release'}
           - {os: macOS-latest, r: 'oldrel'}
-          - {os: ubuntu-20.04, r: 'release'}
-          #- {os: ubuntu-20.04, r: 'devel'}
-          - {os: ubuntu-20.04, r: 'oldrel'}
-          - {os: ubuntu-20.04, r: '3.6'}
+          - {os: ubuntu-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          #- {os: ubuntu-latest, r: 'oldrel'}
+
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
 
-      - uses: r-lib/actions/setup-pandoc@v1
+      - uses: r-lib/actions/setup-pandoc@v2
 
-      - uses: r-lib/actions/setup-r@v1
+      - uses: r-lib/actions/setup-r@v2
         with:
           r-version: ${{ matrix.config.r }}
           http-user-agent: ${{ matrix.config.http-user-agent }}
           use-public-rspm: true
 
-      - uses: r-lib/actions/setup-r-dependencies@v1
+      - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: rcmdcheck
-
-      - name: Check
-        env:
-          _R_CHECK_CRAN_INCOMING_: false
-        run: |
-          options(crayon.enabled = TRUE)
-          rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
-        shell: Rscript {0}
+          cache-version: 5
+          extra-packages: any::rcmdcheck
+          needs: check
 
-      - name: Show testthat output
-        if: always()
-        run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
-        shell: bash
+      - uses: r-lib/actions/check-r-package@v2
 
-      - name: Upload check results
-        if: failure()
-        uses: actions/upload-artifact@main
-        with:
-          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
-          path: check

.github/workflows/cran-status.yaml

@@ -0,0 +1,24 @@
+name: CRAN Status Monitor
+
+on:
+  workflow_dispatch:
+  schedule:
+    - cron: '0 10 * * 1,3,5'
+
+jobs:
+  check:
+    runs-on: ubuntu-latest
+    permissions: write-all
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Check
+        uses: dieghernan/cran-status-check@v1
+        with:
+          fail-on-error: "true"
+          create-issue: "false"
+

.github/workflows/lint.yaml

@@ -1,29 +1,71 @@
-# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
-# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+# lintr provides static code analysis for R.
+# It checks for adherence to a given style,
+# identifying syntax errors and possible semantic issues,
+# then reports them to you so you can take action.
+# More details at https://lintr.r-lib.org/
+
+name: lintr
+
 on:
   push:
-    branches: [main, master]
+    branches:
+      - main
+      - master
+  workflow_dispatch:
   pull_request:
-    branches: [main, master]
+    # The branches below must be a subset of the branches above
+    branches:
+      - main
+      - master
+  schedule:
+    - cron: '56 11 * * 5'
 
-name: lint
+permissions:
+  contents: read
 
 jobs:
-  lint:
+  lintr:
+    name: Run lintr scanning
     runs-on: ubuntu-latest
-    env:
-      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: read # for checkout to fetch code
+      security-events: write # for github/codeql-action/upload-sarif to upload SARIF results
+      actions: read # only required for a private repository by github/codeql-action/upload-sarif to get the Action run status
+
     steps:
-      - uses: actions/checkout@v2
+      - name: Checkout code
+        uses: actions/checkout@v4
 
-      - uses: r-lib/actions/setup-r@v1
+      - name: Setup R
+        uses: r-lib/actions/setup-r@v2
         with:
           use-public-rspm: true
 
-      - uses: r-lib/actions/setup-r-dependencies@v1
+      - name: Setup lintr
+        uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: |
+            local::.
+            any::lintr
+
+      - name: Run lintr
+        run: |
+          # Lintr package
+          out <- lintr::lint_package()
+          # Create SARIF report
+          lintr::sarif_output(out, "lintr-results.sarif")
+          # Display
+          out
+        shell: Rscript {0}
+        continue-on-error: true
+
+      - name: Upload analysis results to GitHub
+        uses: github/codeql-action/upload-sarif@v3
         with:
-          extra-packages: lintr
+          sarif_file: lintr-results.sarif
+          wait-for-processing: true
 
-      - name: Lint
-        run: lintr::lint_package()
-        shell: Rscript {0}

.github/workflows/pkgcheck.yaml

@@ -0,0 +1,21 @@
+name: pkgcheck
+
+# This will cancel running jobs once a new run is triggered
+concurrency:
+  group: ${{ github.workflow }}-${{ github.head_ref }}
+  cancel-in-progress: true
+
+on:
+  # Manually trigger the Action under Actions/pkgcheck
+  workflow_dispatch:
+
+jobs:
+  pkgcheck:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: ropensci-review-tools/pkgcheck-action@main
+        with:
+          summary-only: false
+          post-to-issue: true
+          append-to-issue: true
+

.github/workflows/recheck.yaml

@@ -0,0 +1,20 @@
+# Workflow derived from https://github.com/r-devel/recheck
+on:
+    workflow_dispatch:
+      inputs:
+        which:
+          type: choice
+          description: Which dependents to check
+          options:
+          - strong
+          - most
+
+name: r-devel reverse dependency check
+
+jobs:
+    revdep_check:
+      name: Reverse check ${{ inputs.which }} dependents
+      uses: r-devel/recheck/.github/workflows/recheck.yml@v1
+      with:
+        which: ${{ inputs.which }}
+

.github/workflows/revdepcheck.yaml

@@ -0,0 +1,55 @@
+on:
+  workflow_dispatch:
+
+name: revdepcheck
+
+jobs:
+  revdepcheck:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+           #- {os: windows-latest, r: 'release'}
+          - {os: macOS-latest, r: 'release'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: |
+            local::.
+            dieghernan/pkgdev
+            r-lib/revdepcheck
+          needs: check
+
+      - name: revdepcheck
+        run: |
+          revdepcheck::revdep_reset()
+          revdepcheck::revdep_check(num_workers = 4)
+          pkgdev::add_global_gitgnore()
+
+          usethis::use_build_ignore("revdep")
+
+        shell: Rscript {0}
+
+      - name: Commit results
+        run: |
+          git config --local user.name "github-actions[bot]"
+          git config --local user.email "41898282+github-actions[bot]@users.noreply.github.com"
+          git add -A
+          git commit -m 'revdepcheck' || echo "No changes to commit"
+          git push origin || echo "No changes to commit"
+