Unit Tests #923
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| name: Unit Tests | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: '00 4 * * *' # daily at 4AM | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.9', '3.10', "3.11", "3.12"] | |
| optional-deps: ['no-extras', 'extras'] | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install test requirements | |
| shell: bash -l {0} | |
| run: | | |
| set -vxeuo pipefail | |
| python -m pip install -v . | |
| if [[ ${{ matrix.optional-deps }} = extras ]]; then | |
| python -mpip install av jinja2 jpype1 matplotlib moviepy scikit-image tifffile | |
| fi | |
| python -m pip install coverage pytest | |
| python -m pip list | |
| - name: Test with pytest | |
| shell: bash -l {0} | |
| run: | | |
| set -vxeuo pipefail | |
| python -c 'import pims.bioformats; pims.bioformats.download_jar()' | |
| coverage run -m pytest -svra | |
| coverage report | |
| - name: Upload code coverage | |
| uses: codecov/codecov-action@v3 |