Added drop=FALSE when subsetting the coldata #121
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| ## Following the example workflow at | |
| ## https://github.com/grimbough/biocActionsExamples/blob/2205c9ff10ae2ebf04b5477028bc50397c6b61b4/.github/workflows/example-workflow.yml | |
| on: | |
| push: | |
| pull_request: | |
| workflow_dispatch: | |
| name: R-CMD-check-bioc | |
| jobs: | |
| build-check: | |
| name: Bioc ${{ matrix.bioc-version }} (${{ matrix.os }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| bioc-version: [devel] ## Test on Bioconductor's latest devel | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Setup R and Bioconductor | |
| uses: grimbough/bioc-actions/setup-bioc@v1 | |
| with: | |
| bioc-version: ${{ matrix.bioc-version }} | |
| bioc-mirror: https://ftp.gwdg.de/pub/misc/bioconductor | |
| use-public-rspm: false | |
| - name: Install pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Install dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache-version: 1 | |
| - name: Build, Install, Check | |
| id: build-install-check | |
| uses: grimbough/bioc-actions/build-install-check@v1 | |
| with: | |
| package-directory: '.' | |
| ## Turn off the checks that we know will fail | |
| ## Cause the workflow to error if any new errors appear | |
| - name: Run BiocCheck with arguments | |
| uses: grimbough/bioc-actions/run-BiocCheck@v1 | |
| with: | |
| package-directory: '.' | |
| arguments: '--no-check-bioc-help --no-check-version-num --no-check-news' | |
| error-on: 'warning' | |
| - name: Upload check output | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: ${{ matrix.os }}-bioc-${{ matrix.bioc-version}} | |
| path: | | |
| ${{ steps.build-install-check.outputs.check-dir }} | |
| ${{ steps.build-install-check.outputs.source-tarball }} | |
| ${{ steps.build-install-check.outputs.package-binary }} |