protcur server update to latest flask convesntions

analysis add missing attrs on Hybrid

protcur/protcur/analysis.py

@@ -223,6 +223,8 @@ class Hybrid(HypothesisHelper):
     _replies = {}
     _astParentIndex = {}
     _nonAstParentIndex = {}
+    _lift_reply_tags = tuple()
+    _splice_tags = tuple()
 
     def __new__(cls, anno, annos):
         """ namespace with the colon to make it simple to allow

protcur/protcur/server.py

@@ -329,7 +329,8 @@ def route_controlled_tags():
     def route_curation():
         out = ''
         for route in 'papers', 'annotations', 'tags', 'ast', 'citations':
-            url = request.base_url + route
+            log.debug(request.base_url)
+            url = request.base_url + '/' + route
             out += f'<a href={url}>{route}</a> <br>'
         return out
 
@@ -565,13 +566,15 @@ def sparc_tabulations_document(experiment):
         """ TODO not quite document level, more experiment level """
         return 'TODO'
 
-    @app.before_first_request
     def sparc_runonce():
         # populate existing iris
         # FIXME might still cause issue if someone types a new paper
         # into the url bar before updating the documents page
         hls = set(get_hypothesis_local(uri) for uri in SparcMI.uris)
 
+    with app.app_context():
+        sparc_runonce()
+
     return app