Gcc8 sems v2 pr build

.github/workflows/AT2.yml

@@ -41,7 +41,7 @@ jobs:
           mkdir -p /home/Trilinos/src/Trilinos
           mkdir -p /home/Trilinos/build
       - name: Clone trilinos
-        uses: actions/checkout@1d96c772d19495a3b5c517cd2bc0cb401ea0529f # v4.1.3
+        uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4.1.4
         with:
           fetch-depth: 0
       - name: Repo status
@@ -99,7 +99,7 @@ jobs:
           mkdir -p /home/Trilinos/src/Trilinos
           mkdir -p /home/Trilinos/build
       - name: Clone trilinos
-        uses: actions/checkout@1d96c772d19495a3b5c517cd2bc0cb401ea0529f # v4.1.3
+        uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4.1.4
         with:
           fetch-depth: 0
       - name: Repo status

.github/workflows/clang_format.yml

@@ -9,7 +9,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@1d96c772d19495a3b5c517cd2bc0cb401ea0529f # v4.1.3
+    - uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4.1.4
     - uses: DoozyX/clang-format-lint-action@11b773b1598aa4ae3b32f023701bca5201c3817d # v0.17
       with:
         source: './packages/muelu ./packages/tempus ./packages/teko ./packages/xpetra'

.github/workflows/codeql.yml

@@ -58,11 +58,11 @@ jobs:
         # your codebase is analyzed, see https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/codeql-code-scanning-for-compiled-languages
     steps:
     - name: Checkout repository
-      uses: actions/checkout@1d96c772d19495a3b5c517cd2bc0cb401ea0529f # v4.1.3
+      uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4.1.4
 
     # Initializes the CodeQL tools for scanning.
     - name: Initialize CodeQL
-      uses: github/codeql-action/init@8f596b4ae3cb3c588a5c46780b86dd53fef16c52 # v3.25.2
+      uses: github/codeql-action/init@d39d31e687223d841ef683f52467bd88e9b21c14 # v3.25.3
       with:
         languages: ${{ matrix.language }}
         build-mode: ${{ matrix.build-mode }}
@@ -85,6 +85,6 @@ jobs:
           make -j 2
 
     - name: Perform CodeQL Analysis
-      uses: github/codeql-action/analyze@8f596b4ae3cb3c588a5c46780b86dd53fef16c52 # v3.25.2
+      uses: github/codeql-action/analyze@d39d31e687223d841ef683f52467bd88e9b21c14 # v3.25.3
       with:
         category: "/language:${{matrix.language}}"

.github/workflows/dependency-review.yml

@@ -17,11 +17,11 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Harden Runner
-        uses: step-security/harden-runner@63c24ba6bd7ba022e95695ff85de572c04a18142 # v2.7.0
+        uses: step-security/harden-runner@a4aa98b93cab29d9b1101a6143fb8bce00e2eac4 # v2.7.1
         with:
           egress-policy: audit
 
       - name: 'Checkout Repository'
-        uses: actions/checkout@1d96c772d19495a3b5c517cd2bc0cb401ea0529f # v4.1.3
+        uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4.1.4
       - name: 'Dependency Review'
-        uses: actions/dependency-review-action@5bbc3ba658137598168acb2ab73b21c432dd411b # v4.2.5
+        uses: actions/dependency-review-action@e58c696e52cac8e62d61cc21fda89565d71505d7 # v4.3.1

.github/workflows/detect-git-lfs.yml

@@ -12,7 +12,7 @@ jobs:
 
     steps:
     - name: Check out code
-      uses: actions/checkout@1d96c772d19495a3b5c517cd2bc0cb401ea0529f # v4.1.3
+      uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4.1.4
       with:
         fetch-depth: 0
 

.github/workflows/detect-mpi-comm-world.yml

@@ -12,7 +12,7 @@ jobs:
 
     steps:
     - name: Check out code
-      uses: actions/checkout@1d96c772d19495a3b5c517cd2bc0cb401ea0529f # v4.1.3
+      uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4.1.4
       with:
         fetch-depth: 0
 

.github/workflows/scorecards.yml

@@ -31,7 +31,7 @@ jobs:
 
     steps:
       - name: "Checkout code"
-        uses: actions/checkout@1d96c772d19495a3b5c517cd2bc0cb401ea0529f # v4.1.3
+        uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4.1.4
         with:
           persist-credentials: false
 
@@ -66,6 +66,6 @@ jobs:
 
       # Upload the results to GitHub's code scanning dashboard.
       - name: "Upload to code-scanning"
-        uses: github/codeql-action/upload-sarif@8f596b4ae3cb3c588a5c46780b86dd53fef16c52 # v3.25.2
+        uses: github/codeql-action/upload-sarif@d39d31e687223d841ef683f52467bd88e9b21c14 # v3.25.3
         with:
           sarif_file: results.sarif

.github/workflows/spack.yml

@@ -24,7 +24,7 @@ jobs:
         with:
           access_token: ${{ github.token }}
       - name: Clone Trilinos
-        uses: actions/checkout@1d96c772d19495a3b5c517cd2bc0cb401ea0529f # v4.1.3
+        uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4.1.4
         with:
           fetch-depth: 1
       - name: Spack build

CMakeLists.txt

@@ -133,6 +133,9 @@ IF(enabled_deprecated_packages)
   message("********************************************************************")
   message("")
   message(WARNING "Deprecated packages that are enabled: ${enabled_deprecated_packages}")
+  IF(Trilinos_HIDE_DEPRECATED_CODE)
+    message(FATAL_ERROR "Trilinos cannot be built with deprecated code hidden if any deprecated packages are enabled!")
+  ENDIF()
 ENDIF()
 
 message(STATUS "If publishing results using Trilinos, please cite us: https://trilinos.github.io/cite.html")

RELEASE_NOTES

@@ -16,6 +16,11 @@ Framework
     the user is depending on (e.g. if you depend on ThyraEpetraAdapters, enable
     that explicitly instead of Thyra and Epetra and allowing TriBITS to enable
     the adapters).
+  - Added deprecation warnings to all deprecated packages.  The warnings are able
+    to be disabled via the `Trilinos_SHOW_DEPRECATED_WARNINGS` option (this is
+    also available as a per-package option).  These warnings are intended to
+    notify users that pacakge capability they are using will be removed in upcoming
+    releases.
 
 ###############################################################################
 #                                                                             #

packages/PyTrilinos/CMakeLists.txt

@@ -54,6 +54,8 @@ ENDIF()
 # Set the package version number
 SET(PyTrilinos_VERSION ${Trilinos_VERSION})
 
+TRIBITS_ADD_SHOW_DEPRECATED_WARNINGS_OPTION()
+
 # Define the list of PyTrilinos packages and modules.  Packages are
 # the top-level names only, such as Epetra, AztecOO and NOX.  The list
 # of modules is similar to the packages, except it contains the names

packages/PyTrilinos/cmake/PyTrilinos_config.h.in

@@ -165,3 +165,6 @@
   #endif
 
 #endif
+
+#cmakedefine PyTrilinos_SHOW_DEPRECATED_WARNINGS
+

packages/PyTrilinos/src/PyTrilinos_Amesos_Headers.hpp

@@ -82,3 +82,10 @@
 #endif
 
 #endif
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_Anasazi_Headers.hpp

@@ -81,3 +81,10 @@
 #endif
 
 #endif
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_AztecOO_Headers.hpp

@@ -52,3 +52,10 @@
 #include "AztecOO_Version.h"
 
 #endif
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_DAP.hpp

@@ -139,3 +139,10 @@ class DistArrayProtocol
 }
 
 #endif
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_Domi_Headers.hpp

@@ -61,3 +61,10 @@
 #include "Domi_MDVector.hpp"
 
 #endif
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_Domi_Util.hpp

@@ -318,3 +318,10 @@ convertToDistArray(Domi::MDVector< Scalar > & mdVector)
 }
 
 #endif
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_EpetraExt_Headers.hpp

@@ -72,3 +72,10 @@
 #endif
 
 #endif
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_EpetraExt_Util.hpp

@@ -212,3 +212,10 @@ convertArrayOfIntToPython(const Teuchos::Array<int> & tai);
 }  // Namespace PyTrilinos
 
 #endif // PYTRILINOS_EPETRAEXT_UTIL_HPP
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_Epetra_Headers.hpp

@@ -83,3 +83,10 @@
 #include "PyTrilinos_Epetra_Util.hpp"
 
 #endif
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_Epetra_Util.hpp

@@ -232,3 +232,10 @@ convertToDistArray(const Epetra_MultiVector & emv);
 }  // Namespace PyTrilinos
 
 #endif // PYTRILINOS_EPETRA_UTIL_HPP
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_FILEstream.hpp

@@ -73,3 +73,10 @@ class FILEstream : public std::streambuf
 }  // Namespace PyTrilinos
 
 #endif
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_Galeri_Headers.hpp

@@ -56,3 +56,10 @@
 #include "Galeri_ReadHB.h"
 
 #endif
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_IFPACK_Headers.hpp

@@ -60,3 +60,10 @@
 #include "Ifpack_Amesos.h"
 
 #endif
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_Isorropia_Headers.hpp

@@ -73,3 +73,10 @@
 #endif
 
 #endif
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_Komplex_Headers.hpp

@@ -55,3 +55,10 @@
 #include "Komplex_LinearProblem.h"
 
 #endif
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_LOCA_Epetra_Headers.hpp

@@ -52,3 +52,10 @@
 #include "LOCA_Epetra_Interface_TimeDependentMatrixFree.H"
 
 #endif
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_LOCA_Headers.hpp

@@ -55,3 +55,10 @@
 #include "LOCA_SaveEigenData_DefaultStrategy.H"
 
 #endif
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_LOCA_Hopf_Headers.hpp

@@ -54,3 +54,10 @@
 #include "LOCA_Hopf_MinimallyAugmented_Constraint.H"
 
 #endif
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_LinearProblem.hpp

@@ -106,3 +106,10 @@ class LinearProblem : public Epetra_LinearProblem
 }
 
 #endif
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_ML_Headers.hpp

@@ -62,3 +62,10 @@
 #undef Copy
 
 #endif
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_ML_Util.hpp

@@ -89,3 +89,10 @@ class PyMatrix : public MLAPI::Operator
 }  // Namespace PyTrilinos
 
 #endif 
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_NOX_Abstract_Headers.hpp

@@ -55,3 +55,10 @@
 #include "NOX_Solver_Generic.H"
 
 #endif
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+

packages/PyTrilinos/src/PyTrilinos_NOX_Epetra_Headers.hpp

@@ -65,3 +65,10 @@
 #include "NOX_Epetra_Interface_Preconditioner.H"
 
 #endif
+
+#if defined(PyTrilinos_SHOW_DEPRECATED_WARNINGS)
+#ifdef __GNUC__
+#warning "The PyTrilinos package is deprecated"
+#endif
+#endif
+