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WikiPathways

Open source software development related to the WikiPathways project
README.md

Welcome to the WikiPathways Github Organization 👋

👩‍💻 Core Repositories

🙋‍♀️ Help and Disscussion forums

  • Help - Public help forum
  • FAQ - Frequently Asked Questions
  • Pathway Curation Tasks - Prioritized pathway curation tasks; for beginners, advanced and domain-specific authors
  • Dev chat - Developer discussions

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  1. wikipathways-database wikipathways-database Public

    WikiPathways Database

    Shell 5 15

  2. pvjs pvjs Public

    JavaScript-based pathway viewer and editor

    TypeScript 34 19

  3. rWikiPathways rWikiPathways Public

    R package for WikiPathways API

    HTML 15 6

  4. pywikipathways pywikipathways Public

    Python Client Package for WikiPathways

    Python 16 4

Repositories

Showing 10 of 154 repositories
  • wikipathways-database Public

    WikiPathways Database

    wikipathways/wikipathways-database’s past year of commit activity
    Shell 5 15 16 (1 issue needs help) 1 Updated Jan 11, 2025
  • wikipathways-homology Public

    Pathway database for homology-mapped content

    wikipathways/wikipathways-homology’s past year of commit activity
    0 CC0-1.0 0 0 0 Updated Jan 11, 2025
  • wikipathways.github.io Public

    GitHub pages for GPML-Repo

    wikipathways/wikipathways.github.io’s past year of commit activity
    HTML 7 18 13 (1 issue needs help) 0 Updated Jan 10, 2025
  • wikipathways-data-release Public

    Monthly data release

    wikipathways/wikipathways-data-release’s past year of commit activity
    HTML 1 CC0-1.0 1 2 0 Updated Jan 10, 2025
  • wikipathways-assets Public

    Accessory files generated downstream of approved GPMLs

    wikipathways/wikipathways-assets’s past year of commit activity
    0 CC0-1.0 1 0 0 Updated Jan 10, 2025
  • wikipathways-collection Public
    wikipathways/wikipathways-collection’s past year of commit activity
    Java 0 1 1 0 Updated Jan 8, 2025
  • wikipathways-pmcfigurebot Public Forked from AlexanderPico/pmcfigurebot

    Query figures indexed by PubMed Central and collect metadata

    wikipathways/wikipathways-pmcfigurebot’s past year of commit activity
    R 0 CC0-1.0 4 1 0 Updated Jan 6, 2025
  • SARS-CoV-2-WikiPathways Public

    Temporary repository of RDF of selected pathways from WikiPathways, supporting the Wikidata bot.

    wikipathways/SARS-CoV-2-WikiPathways’s past year of commit activity
    Java 2 CC0-1.0 3 1 0 Updated Dec 30, 2024
  • sr24-curation Public
    wikipathways/sr24-curation’s past year of commit activity
    Java 0 0 0 0 Updated Dec 28, 2024
  • WikiPathwaysCurator Public

    Unit tests that validate the WikiPathways content and support the curation of the knowledge base.

    wikipathways/WikiPathwaysCurator’s past year of commit activity
    Java 1 MIT 2 11 0 Updated Dec 28, 2024
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