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The Genomic Epidemiology Ontology (GenEpiO) project aims to develop a more comprehensive controlled vocabulary for infectious disease surveillance and outbreak investigations. Recognizing that GenEpiO encompasses many domains, we have formed a GenEpiO consortium for enhancing its content via interested parties that need particular domain terminology. For more information explore this wiki or www.genepio.org.

Resources Overview

Edit and sometimes event comment access is limited to CIDGOH developers and curators. If you are a GENEPIO curator or collaborator in need of access please contact the GENEPIO team.

• CIDGOH_Ontology Curation Templates
  • Comprehensive reference LEGEND tab of (ideally) all headers and ROBOT commands used across GENEPIO templates and other workbook resources.
  • ROBOT curation table templates.
• CIDGOH_Ontology Reporting
  • For recording metrics used for stakeholder reports.
• GENEPIO_Term ID Reservations
  • For tracking IDs reserved for early drafted terms and/or automated curation work.
  • Includes list of curation GenEpiO ID ranges (double check genepio-idranges.owl for most up-to-date list).
• Submission Requests
  • CIDGOH_ECTO Submissions = Environmental conditions, treatments and exposures ontology (ECTO)
  • CIDGOH_ENVO Submissions = Environment Ontology (ENVO)
  • CIDGOH_OBI Submissions = Ontology for Biomedical Investigations (OBI)
  • CIDGOH_<TEMPLATE> Submissions = A blank submission tracker for submitting to non-GENEPIO / non-CIDGOH ontologies.
    • Note: Be sure to double check the Submission Requests gDrive folder for other submission trackers as more may have been created without being listed here. CIDGOH curators share these trackers, we don't make one per curator.