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@adeschen adeschen released this 21 Aug 00:14
· 289 commits to main since this release
v0.99.8
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Learn about vigilant mode.

The Robust Ancestry Inference using Data Synthesis (RAIDS) package enables accurate and robust inference of genetic ancestry from various types of molecular data, including whole-genome, whole-exome, targeted gene panels and RNA sequences, as described in our manuscript. Our tools retain high accuracy in presence of somatic alterations, such as those caused by cancer.

This code and analysis pipeline were designed and developed for the following publication:

Pascal Belleau, Astrid Deschênes, Nyasha Chambwe, David A. Tuveson, Alexander Krasnitz; Genetic Ancestry Inference from Cancer-Derived Molecular Data across Genomic and Transcriptomic Platforms. Cancer Res 1 January 2023; 83 (1): 49–58. https://doi.org/10.1158/0008-5472.CAN-22-0682

SIGNIFICANT USER-VISIBLE CHANGES

o The new runRNAAncestry() function executes most steps leading to the ancestry inference call on a specific RNA profile.
o A vignette describing the Reference GDS files has been created.

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