Merge pull request #7 from OpenOmics/resolution_0.1

feat: include resolution 0.1 in umaps
OpenOmics · Jan 16, 2025 · 90ce21a · 90ce21a
2 parents ad5baf9 + db7af51
commit 90ce21a
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diff --git a/workflow/scripts/seuratCiteSampleQC.R b/workflow/scripts/seuratCiteSampleQC.R
@@ -341,7 +341,7 @@ seur <- RunUMAP(seur, reduction = 'pca', dims = 1:30, assay = 'RNA')
 
 coord <- Embeddings(seur, reduction='pca')[,1:30]
 d <- dist(coord, method="euclidean")
-for(resolution in c(seq(0.2,1.0,0.2), 1.5, 2.0)){
+for(resolution in c(0.1, seq(0.2,1.0,0.2), 1.5, 2.0)){
   seur <- FindClusters(seur, resolution = resolution)
 
   #Calculate silhouette scores and generate plots

diff --git a/workflow/scripts/seuratSampleQC.R b/workflow/scripts/seuratSampleQC.R
@@ -201,7 +201,7 @@ seur <- RunUMAP(seur, reduction = 'pca', dims = 1:30, assay = 'RNA')
 
 coord <- Embeddings(seur, reduction='pca')[,1:30]
 d <- dist(coord, method="euclidean")
-for(resolution in c(seq(0.2,1.0,0.2), 1.5, 2.0)){
+for(resolution in c(0.1, seq(0.2,1.0,0.2), 1.5, 2.0)){
   seur <- FindClusters(seur, resolution = resolution)
 
   #Calculate silhouette scores and generate plots