Updated trusted tools (2023-02-25)

asaim.yaml.lock

@@ -7,6 +7,7 @@ tools:
   revisions:
   - 1790dcf3c32d
   - 494b2ec08162
+  - 4df8de2d0e48
   - 653e89d73fc4
   - 69ebb7f46e45
   - 7068f48d0ef9
@@ -223,5 +224,6 @@ tools:
 - name: kleborate
   owner: iuc
   revisions:
+  - 374b2e9ade86
   - '383036561810'
   tool_panel_section_label: Metagenomic Analysis

bgruening.yaml.lock

@@ -31,6 +31,11 @@ tools:
   - bc88856eddab
   - e78e25d3b4bd
   tool_panel_section_label: Annotation
+- name: cpat
+  owner: bgruening
+  revisions:
+  - 8e9e228c54c4
+  tool_panel_section_label: Annotation
 - name: edta
   owner: bgruening
   revisions:
@@ -41,6 +46,16 @@ tools:
   revisions:
   - 785ed8621503
   tool_panel_section_label: Annotation
+- name: pfamscan
+  owner: bgruening
+  revisions:
+  - 15cff34c2005
+  tool_panel_section_label: Annotation
+- name: blobtoolkit
+  owner: bgruening
+  revisions:
+  - 7d9ee8cd14b8
+  tool_panel_section_label: Assembly
 - name: flye
   owner: bgruening
   revisions:
@@ -68,6 +83,11 @@ tools:
   revisions:
   - f6065bc6e428
   tool_panel_section_label: Assembly
+- name: nextdenovo
+  owner: bgruening
+  revisions:
+  - 733eab97b979
+  tool_panel_section_label: Assembly
 - name: racon
   owner: bgruening
   revisions:

climate.yaml.lock

@@ -244,6 +244,7 @@ tools:
   revisions:
   - 1acf88921176
   - 299307abd804
+  - 3b12bf9b4b87
   - 5fe1dc76176e
   - 87908c76ca8d
   - 9cec81e1b90e

ecology.yaml.lock

@@ -482,6 +482,7 @@ tools:
   owner: iuc
   revisions:
   - 0ea86f6bf2a1
+  - 14e7c35f3d00
   - 2824d77cd8f8
   - 326a3db8d9d1
   - 4ac4e7083b7e
@@ -526,6 +527,7 @@ tools:
   revisions:
   - 1acf88921176
   - 299307abd804
+  - 3b12bf9b4b87
   - 5fe1dc76176e
   - 87908c76ca8d
   - 9cec81e1b90e
@@ -771,6 +773,7 @@ tools:
   revisions:
   - 209b7c5ee9d7
   - 399da6b5ec21
+  - 503bcd6ebe4b
   - ae8c4b2488e7
   tool_panel_section_label: Text Manipulation
 - name: regex_replace
@@ -1341,6 +1344,7 @@ tools:
   owner: ecology
   revisions:
   - 1015a0070bac
+  - 4e7c1fb5e894
   tool_panel_section_label: Biodiversity data exploration
 - name: ab1_fastq_converter
   owner: ecology

europe-custom.yaml.lock

@@ -19,6 +19,7 @@ tools:
   - 0a5c785ac6db
   - 3e38c9b3214f
   - 4f7a5ccd2ae9
+  - 589e7e57fd6d
   - 7ab85ac5f64b
   - 87ee588b3d45
   - a68aa6c1204a
@@ -131,6 +132,7 @@ tools:
   - 1790dcf3c32d
   - 26b7446bb17e
   - 494b2ec08162
+  - 4df8de2d0e48
   - 653e89d73fc4
   - 69ebb7f46e45
   - 7068f48d0ef9
@@ -1121,6 +1123,7 @@ tools:
   - 4074fc1940e2
   - 41929aa1e7f3
   - 44959aa06aeb
+  - 4df95e2d7f61
   - 5ec75f5dae3c
   - 7ed2edc1337f
   - 850f3679b9b4
@@ -1221,6 +1224,7 @@ tools:
   - 90d16db017d7
   - 9301937c9037
   - a37612abf7f9
+  - a56fbe2d6ba7
   - af814359d244
   - c7bd0cc53524
   - ce44c6f2ba38
@@ -1295,6 +1299,7 @@ tools:
   - 62d212192002
   - 6e45b443ef1f
   - 914cfcba0ec8
+  - ae618321f34a
   - cef79931dda5
   - dd4df992d93d
   - eba36e001f45
@@ -2632,8 +2637,8 @@ tools:
 - name: gecco
   owner: althonos
   revisions:
-  - cc91d730cc4f
   - 359232b58f6a
+  - cc91d730cc4f
   tool_panel_section_label: Annotation
 - name: velvet
   owner: devteam

galaxy-australia.yaml.lock

@@ -18,6 +18,7 @@ tools:
   revisions:
   - 3c8227556fdc
   - 48c13389050d
+  - 9baa871cb1d1
   - a74dbfee5a86
   tool_panel_section_label: Assembly
 - name: cactus_export
@@ -26,4 +27,5 @@ tools:
   - 5bf688a3ee2c
   - '764845535798'
   - aaa0d6a8b808
+  - fc2e49f91e52
   tool_panel_section_label: Assembly

rnateam.yaml.lock

@@ -169,3 +169,8 @@ tools:
   revisions:
   - c82c41550f82
   tool_panel_section_label: Peak Calling
+- name: peakachu
+  owner: rnateam
+  revisions:
+  - 940b1d632f4d
+  tool_panel_section_label: Peak Calling

single-cell-ebi-gxa.yaml.lock

@@ -87,6 +87,7 @@ tools:
   - 52ee45fd7690
   - 53a251c6d991
   - 6aa025ea64d3
+  - 825dfd66e3fb
   - 890fb06a2893
   - 93ecc487a7d1
   - 98f37271c17c
@@ -112,6 +113,7 @@ tools:
   - 3d242b0d97d0
   - 53e6944bd162
   - 5ec3b715809c
+  - 6417cccad133
   - 6b2673e1f4c6
   - 7779b9dcf040
   - 7ad420b1be89
@@ -147,6 +149,7 @@ tools:
   - dcfb23758646
   - df56c78c5a8e
   - e05cafd4e2b2
+  - e9283529cba1
   tool_panel_section_id: hca_sc_scanpy_tools
 - name: scanpy_filter_genes
   owner: ebi-gxa
@@ -157,6 +160,7 @@ tools:
   - 228a51c5bc35
   - 23d838d1569d
   - 303c559f4e1f
+  - 474a69c47184
   - 4bc377096eea
   - 6953c7e519cd
   - 6ac8b9a3a279
@@ -179,6 +183,7 @@ tools:
   - 1e820072e8f1
   - 2704d80b7e91
   - 2784759ad631
+  - 2ccd9f9e2cd0
   - 35caf3c27c91
   - 455846afcc73
   - 5a62843a2b9f
@@ -212,6 +217,7 @@ tools:
   - 67fa4288eee5
   - 7042ce140caa
   - 71668dd2d47b
+  - 81c34e67f262
   - 9fe7e2da8fe6
   - a6a896082cd7
   - af5e4efa9e66
@@ -232,6 +238,7 @@ tools:
   - 144c405d3ca4
   - 1c59a010bb44
   - 258e13397a8a
+  - 2861ca3bfe4d
   - 305d0cbe0ffd
   - 321f1b073cbc
   - 438a09194001
@@ -262,6 +269,7 @@ tools:
   - 439f7f939d46
   - 463d4fa8f5ec
   - 47c747351d62
+  - 6b97ffba31da
   - 7852b823ad45
   - 8d9c22419c56
   - 9681ec095ed5
@@ -285,6 +293,7 @@ tools:
   - 81069608d570
   - 93680e2ff8f4
   - 9dbd170bec14
+  - a8c73996ac50
   - ae4debc68f4a
   - b9dd12ab0550
   - bdd0e28e16bc
@@ -303,6 +312,7 @@ tools:
   - 1be0fc4d8654
   - 210026a1a50a
   - 278dfcba81fd
+  - 35f6611fb8c3
   - 452e0f19c2a2
   - 56d22aa6cb3b
   - 68e82882a8f9
@@ -336,6 +346,7 @@ tools:
   - d8423c3f869d
   - e8e54d565c92
   - eb10fa649a7e
+  - f489ccdd423c
   tool_panel_section_id: hca_sc_scanpy_tools
 - name: scanpy_read_10x
   owner: ebi-gxa
@@ -351,6 +362,7 @@ tools:
   - 72cf1c8f5870
   - 741d50b6dc78
   - 7757f4b43174
+  - 9afcfcd1d215
   - b021ae78ccb4
   - bd4a491baf39
   - c2fe8568f35f
@@ -363,6 +375,7 @@ tools:
 - name: scanpy_regress_variable
   owner: ebi-gxa
   revisions:
+  - 1200b55768ce
   - 1ad1d9713563
   - 2131ec9d52e2
   - 2cf10c8c094d
@@ -398,6 +411,7 @@ tools:
   - 900b3c31fd3a
   - a05d2553484e
   - c869331377bf
+  - e2ca1846080f
   - e3123e51e781
   - f10df597ed6d
   tool_panel_section_id: hca_sc_scanpy_tools
@@ -409,6 +423,7 @@ tools:
   - 1ab80fc6f667
   - 202e28c59b59
   - 299aca1029a1
+  - 2e06dabb3f2f
   - 5c54f3eb81d3
   - 730d098a9f23
   - 8a6860957c84
@@ -436,6 +451,7 @@ tools:
   - 5d2c8acd2ae4
   - 65c3ec07502b
   - 6c40cc3e9dc0
+  - 7c6581b57ad4
   - 885681d258b4
   - 932e99b4dc5f
   - a6190ae4fe16
@@ -448,6 +464,7 @@ tools:
   revisions:
   - 0488639e0e8a
   - 211fe30d83be
+  - 4e7d55438238
   - 69df3f287281
   - 6d4f88995e40
   - 7ea07327147a
@@ -475,6 +492,7 @@ tools:
   - 4fbc4b97090f
   - 5063cd7f8c89
   - 544d45fca48f
+  - 59028945c857
   - 7798c318e7d7
   - 7ee4417b24cc
   - 8b4dae3748d3
@@ -490,6 +508,7 @@ tools:
   owner: ebi-gxa
   revisions:
   - 091e5d709ef7
+  - 181d61d2f3cd
   - 2c6340dad187
   - 2e74fd7b5f45
   - 3589dfaef3f6
@@ -531,6 +550,7 @@ tools:
   - a5731f913326
   - abae3d11d920
   - b282c349bd67
+  - bd4a244faeb8
   - c111d7d04f0b
   - e31937baa330
   - fe562424a0a6
@@ -557,6 +577,7 @@ tools:
   - e2d0dc8a50ca
   - ea8fd43b7e1e
   - eabf8e76e007
+  - f86b2c3bc459
   tool_panel_section_id: hca_sc_scanpy_tools
 - name: scanpy_integrate_combat
   owner: ebi-gxa
@@ -566,6 +587,7 @@ tools:
   - 27c74c83eae5
   - 2de673ef8c13
   - 352cdf3b2f75
+  - 3c2ff50cef4a
   - 5c25b8a985e8
   - 7322e7583847
   - 7a573108f5f4
@@ -577,6 +599,7 @@ tools:
   - 14076b38c3bb
   - 1d92cea73607
   - 2cef3539f420
+  - 3111bcf039dd
   - 3f61bf17ca50
   - 6903bc865d63
   - 739f68e3cbca
@@ -588,6 +611,7 @@ tools:
   owner: ebi-gxa
   revisions:
   - 1504334ef569
+  - 3ba9371733a2
   - 4951ff9f43db
   - 5bb009f95e03
   - 94697510d55f
@@ -601,6 +625,7 @@ tools:
   owner: ebi-gxa
   revisions:
   - 032d52b00b7c
+  - 1fb88fd7dce5
   - 26805c747e15
   - 3803efa11152
   - 3d9322fd5716
@@ -614,16 +639,19 @@ tools:
   owner: ebi-gxa
   revisions:
   - 021a6e341dcf
+  - 2d3b13bb704a
   tool_panel_section_id: hca_sc_scanpy_tools
 - name: scanpy_multiplet_scrublet
   owner: ebi-gxa
   revisions:
   - 8ca3ab8300ce
+  - b8126b3bf5d0
   tool_panel_section_id: hca_sc_scanpy_tools
 - name: scanpy_integrate_bbknn
   owner: ebi-gxa
   revisions:
   - 032d52b00b7c
+  - 1fb88fd7dce5
   - 26805c747e15
   - 3803efa11152
   - 3d9322fd5716