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v0.7.5

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@salvadord salvadord released this 03 Dec 20:16
· 2937 commits to master since this release
5f82753

Version 0.7.5

  • Improved NeuroML conversion support

  • Make cfg.checkErrors = True by default, but set to False if using multiple cores or batch

  • Added methods to rename netParams dict keys in a nested format (needed for GUI)

  • Added analysis.plotSpikeStats() func to plot stats of cell rates, ISI CVs and synchronies

  • Added analysis.calculateRate() func to calculate avg and peak rate of pop subset at time range

  • Added analysis.plotRates() func to plot avg and peak rate of different pop subsets at time range

  • Added option to include list of pops or cells in 'include' arguments e.g. include=[['E4','E2'], [1,3]]

  • Added cfg.compactConnFormat option to replace conns dict format with compact list format

  • Added option to plotConn() and plot2Dnet() to load data from compact format json files

  • Adapted python2 code so conversion to python3 via 2to3 command works straight away

  • Added 'instantiate' argument to sim.load function

  • Added 'dpi' argument to analysis.plotSpikeHist()

  • Replaced init()/h.stdinit() with finitialize() so h.v_init and h.dt get set properly

  • Removed call to h.stdrun() but made v_init a global in cfg.hParams and initialized h.tstop to cfg.duration

  • Fixed bug setting globals that don't exist

  • Fixed issue setting global variables when loading from json

  • Fixed issue to make convergence+divergence connections randomization more robust and efficient (issue #254)

  • Fixed bug in colors of plotSpikeHist

  • Fixed bug in replaceDictODict() that lead to wrong results when importing cells

  • Fixed bug when using sim.gatherOnlySimData

  • Fixed bugs in saveLoadV1 example

  • Fixed bug when generating subConn with createNEURONObj=False